View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0645_low_24 (Length: 388)

Name: NF0645_low_24
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0645_low_24
NF0645_low_24
[»] chr1 (2 HSPs)
chr1 (64-378)||(42100278-42100592)
chr1 (248-292)||(7537047-7537091)
[»] chr4 (3 HSPs)
chr4 (235-292)||(52198331-52198388)
chr4 (239-278)||(36498654-36498693)
chr4 (235-292)||(33913930-33913989)
[»] chr8 (3 HSPs)
chr8 (235-283)||(41951176-41951224)
chr8 (239-306)||(6474020-6474087)
chr8 (235-292)||(35910561-35910620)
[»] chr5 (1 HSPs)
chr5 (235-278)||(3622253-3622296)
[»] chr2 (2 HSPs)
chr2 (235-283)||(14818700-14818748)
chr2 (234-274)||(1208617-1208657)
[»] chr7 (1 HSPs)
chr7 (235-306)||(38701558-38701629)
[»] chr6 (2 HSPs)
chr6 (235-298)||(6793471-6793534)
chr6 (235-280)||(28067307-28067352)
[»] chr3 (1 HSPs)
chr3 (214-278)||(782248-782311)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 64 - 378
Target Start/End: Complemental strand, 42100592 - 42100278
Alignment:
Q  64 tgatggagtgattgtaaatattgaagtcttatcgacaaatcaaagttttacggcaatgtaacatttttcaattaaaaaatattggaaaatcagttaaaac 163  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  42100592 tgatggagtaattgtaaatattgaagtcttatcgaaaaatcaaagttttacggcaatgtaacatttttcaaataaaaaatattggaaaatcggttaaaac 42100493  T
Q  164 actccaaatgtagggaaatatttcgagtgattttgtannnnnnngtcttcggtgactttaatgtattttaaatgagagagaattattggttagaagcgag 263  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  42100492 actccaaatgtagggaaatatttcgagtgattttgtatttttgtgtcttcggtgactttaatgtattttaaatgagagagaaatattggttagaagcaag 42100393  T
Q  264 atagagacaaagtcatcaaactcaaagtcgtcgaagtgttacctccaaatgtgttgctaattaagtctcaatgtcaccgaagtgtaaccccgtatcacaa 363  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||     
T  42100392 atagaaacaaagtcatcaaattcaaagtcgtcgaagtgttacctccaaatatattgctaattaagtctcaatgtcaccgaagtgtaaccccgtatcacag 42100293  T
Q  364 ccgcaacaacctatg 378  Q
    |||||||||||||||    
T  42100292 ccgcaacaacctatg 42100278  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 7537047 - 7537091
Alignment:
Q  248 attggttagaagcgagatagagacaaagtcatcaaactcaaagtc 292  Q
    ||||||||| || |||||||||||||||||| |||||||||||||    
T  7537047 attggttaggagagagatagagacaaagtcaccaaactcaaagtc 7537091  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 52198388 - 52198331
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatcaaactcaaagtc 292  Q
    |||||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  52198388 atgagagataattattggttagaatcgagatagagataaagtcgtcaaacttaaagtc 52198331  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 36498654 - 36498693
Alignment:
Q  239 gagagaattattggttagaagcgagatagagacaaagtca 278  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  36498654 gagagaattattggttagaagagagatagagacaaagtca 36498693  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 33913989 - 33913930
Alignment:
Q  235 atgagagagaattattggttagaagcgaga--tagagacaaagtcatcaaactcaaagtc 292  Q
    |||||||||||||||||||||| || ||||  || ||||||||||||||||| |||||||    
T  33913989 atgagagagaattattggttaggagagagagataaagacaaagtcatcaaacacaaagtc 33913930  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 41951224 - 41951176
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatcaaa 283  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||    
T  41951224 atgagagagaattattgattaggagagagatagagacaaagtcatcaaa 41951176  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 6474020 - 6474087
Alignment:
Q  239 gagagaattattggttagaagcgagatagagacaaagtcatcaaactcaaagtcgtcgaagtgttacc 306  Q
    |||| ||||||| |||||||| |||||| ||||||| ||| |||||||||||||  ||||||||||||    
T  6474020 gagataattattagttagaagagagatatagacaaaatcaccaaactcaaagtcaccgaagtgttacc 6474087  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 35910620 - 35910561
Alignment:
Q  235 atgagagagaattattggttagaagcgaga--tagagacaaagtcatcaaactcaaagtc 292  Q
    ||||||| |||||||||||||| || ||||  || ||||||||||||||||| |||||||    
T  35910620 atgagagggaattattggttaggagagagagataaagacaaagtcatcaaacacaaagtc 35910561  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 3622253 - 3622296
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtca 278  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  3622253 atgagagaaaattattggttagaagagagatagagacaaagtca 3622296  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 14818748 - 14818700
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatcaaa 283  Q
    |||||||||||||||||||||  || |||||||||||||||||| ||||    
T  14818748 atgagagagaattattggttatgagagagatagagacaaagtcaccaaa 14818700  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 1208657 - 1208617
Alignment:
Q  234 aatgagagagaattattggttagaagcgagatagagacaaa 274  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  1208657 aatgagagagaattattggttaagagagagatagagacaaa 1208617  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 38701558 - 38701629
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatcaaactcaaagtcgtcgaagtgttacc 306  Q
    |||| |||||||||||||||||||| || ||||| ||||||||| |||| ||||  || || ||||||||||    
T  38701558 atgaaagagaattattggttagaagagatatagaaacaaagtcaccaaattcaagatcatctaagtgttacc 38701629  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 6793534 - 6793471
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatcaaactcaaagtcgtcgaa 298  Q
    |||||||| ||||||||||||| |  |||||||||||||| ||| ||||| ||||||| |||||    
T  6793534 atgagagataattattggttaggatagagatagagacaaaatcaccaaacacaaagtcatcgaa 6793471  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28067352 - 28067307
Alignment:
Q  235 atgagagagaattattggttagaagcgagatagagacaaagtcatc 280  Q
    |||||||||||| |||||||||||| |||||| ||||||| |||||    
T  28067352 atgagagagaatgattggttagaagagagataaagacaaaatcatc 28067307  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 782311 - 782248
Alignment:
Q  214 ggtgactttaatgtattttaaatgagagagaattattggttagaagcgagatagagacaaagtca 278  Q
    |||||||||| |||||||| | |||||||||||  || ||||| || ||||||||||||||||||    
T  782311 ggtgactttagtgtattttga-tgagagagaatgttttgttaggagagagatagagacaaagtca 782248  T

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