View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_27 (Length: 380)
Name: NF0645_low_27
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 45044885 - 45044668
Alignment:
| Q |
29 |
accattaatgttaattaatccaccgagattaccgactgatagaggcctataaatagtggaggttctccttcgnnnnnnntaaacagtacacacaggtttt |
128 |
Q |
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| T |
45044885 |
accattaatgttaattaatccaccgagattaccgactgatagaggcctataaatagtggaggttctccttcgaaaaaaataaacagtacacatagattct |
45044786 |
T |
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| Q |
129 |
caactcatttcaccccaaagttacaatacaaaggcgttnnnnnnnncatacc--tcagattctcc-ttaattatcaatggattcctcctatcgtaacatg |
225 |
Q |
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| T |
45044785 |
caactcatttcaccccaaagt-----tacaaaggcgttaaaaaaaacatatcattcagattctcctttaattatcaatgaattcctcctatcgtaacatg |
45044691 |
T |
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| Q |
226 |
gtatgtacgcaaaagatgctccc |
248 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
45044690 |
gtatgtacgcaaacgatgctccc |
45044668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 45044621 - 45044566
Alignment:
| Q |
295 |
gtgtatacttcaaaattatttgtgctaggttgagttcttatttatgtgcatatatg |
350 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45044621 |
gtgtatacctcaaaattatttgtgctaggttgagttcttatttatgtgcatatatg |
45044566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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