View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_29 (Length: 379)
Name: NF0645_low_29
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 2348258 - 2348597
Alignment:
| Q |
30 |
ataaaaaccgcatagatattgcaatatgtttgggtgagaaagtgataacaaattggaaatctcattttcataagcttctctctccccaagaaaatgcctc |
129 |
Q |
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| T |
2348258 |
ataaaaaccacatagatattgcaatatgtttgggtgagaaagtgataacaaattggaaatctcattttcataagcttctctctccccaagaaaatgcctc |
2348357 |
T |
|
| Q |
130 |
agagcaaaactttgtcctaaccattgaatttccttaaattccttcccccttcccaatcttctcctcacttggtaatctttggatcctaacaacacaccaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2348358 |
agagcaaaactttgtcctaaccattgaatttccttaaattccttcccccttcccaatcttctcctcacttggtaatctttggatcctaacaaaacaccaa |
2348457 |
T |
|
| Q |
230 |
ttggccacaatactttatcattactgtttttgtgattagttttatctgaattaccattcatcaatttcttcaacaacatatctgcaaaatgttgatcatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348458 |
ttggccacaatactttatcattactgtttttgtgattagttttatctgaattaccattcatcaatttcttcaacaacatatctgcaaaatgttgatcatt |
2348557 |
T |
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| Q |
330 |
ctttgaataagtgagtttggaagaaccttttttctctctg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2348558 |
ctttgaataagtgagtttggaagaaccttttttctctctg |
2348597 |
T |
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