View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_3 (Length: 639)
Name: NF0645_low_3
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 295 - 630
Target Start/End: Original strand, 6741916 - 6742255
Alignment:
| Q |
295 |
ggtgctatattgtatcctagtggcttgtggtcacgagttctaatggtagaatgggacttcctaaattttgttatactgcaaccacagcatggtaggagcc |
394 |
Q |
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| T |
6741916 |
ggtgctatattgtatcctagtggcttgtggtcacgagttctaatggtagaatgggactttataaatttcgttatactgtaaccacagcatggtaggagcc |
6742015 |
T |
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| Q |
395 |
tgctgcaatctc--ccaccccattcacttgtgtaagttaaaaagttctttgg--agatgttgaaacaaacagaacttttacagttattttttgggatcta |
490 |
Q |
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| T |
6742016 |
agctgcaatctctcccaccccattcacttgtgtaagttaaaaagttctttggttagaggttgaaacaaacagaacttttacagttattttttgggatcta |
6742115 |
T |
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| Q |
491 |
tcaaacatgaacaaatgactctagtctttcacaatgcacataatttatctatcattaattaattgagtaattttattgcatctaatattgaactattcac |
590 |
Q |
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| T |
6742116 |
tcaaacatgaacaaatgactctagtctttcacaatgcacataatttatctatcattaattaattgagtaattttattgcatctaatattgaactattcac |
6742215 |
T |
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| Q |
591 |
actatatttccttgcttcgttccaatatcttgctctgtgc |
630 |
Q |
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| T |
6742216 |
actatatttccttgcttcgttccaataacttgctttgtgc |
6742255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 6739575 - 6739657
Alignment:
| Q |
179 |
gaacaacatgtgtatctaattgtttgtgcttgtaaaatgatattaacgtgtcctggttagattgcatcataattggattggct |
261 |
Q |
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| T |
6739575 |
gaacaacatgtgtatctaattgtttgtgcttgtaaaatgatattaacgtgtcctggttagattgcatcataattggattggct |
6739657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 6739695 - 6739778
Alignment:
| Q |
95 |
aggttttaatgcttgtttgaactttgaagtggcgatagcataactggtttggcagtttgtttttcgttcgttattgttctatccg |
179 |
Q |
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| T |
6739695 |
aggttttaatgcttgtttgaactttgaagtagcaatagcataactggtttggcagtttgttttt-gttcgtgatttttctatccg |
6739778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 6739780 - 6739819
Alignment:
| Q |
261 |
tttaaagagtgaatttttgctcataaaagataggggtgct |
300 |
Q |
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| T |
6739780 |
tttaaagagtgaatttttgctcataaaagataggggtgct |
6739819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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