View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_low_32 (Length: 366)
Name: NF0645_low_32
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_32 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 23576145 - 23576472
Alignment:
| Q |
11 |
cagagatattgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttt |
110 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23576145 |
cagaaatattgccagaagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaaccgaaggtgatggttt |
23576244 |
T |
|
| Q |
111 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcaggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
23576245 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggactatggaaaacacaacagcttgccggt |
23576344 |
T |
|
| Q |
211 |
aagcctgccggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattcttctagtgcattgtt |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23576345 |
aagcctgctggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtt |
23576444 |
T |
|
| Q |
311 |
tggcatgttaatgagaattacagaatcg |
338 |
Q |
| |
|
||| ||||| |||||||||||||||||| |
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|
| T |
23576445 |
tggaatgtttatgagaattacagaatcg |
23576472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 23595715 - 23596001
Alignment:
| Q |
11 |
cagagatattgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23595715 |
cagaaatattgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttt |
23595814 |
T |
|
| Q |
111 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcaggg |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||| |
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|
| T |
23595815 |
tttctttggatttccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcaggg |
23595914 |
T |
|
| Q |
211 |
aagcctgccggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctt |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
23595915 |
aagcctgccggaatcttctacagcatcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattctt |
23596001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 23604637 - 23604923
Alignment:
| Q |
11 |
cagagatattgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23604637 |
cagaaatattgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttt |
23604736 |
T |
|
| Q |
111 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcaggg |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
23604737 |
tttctttggatttccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcaggg |
23604836 |
T |
|
| Q |
211 |
aagcctgccggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctt |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
23604837 |
aagcctgccggaatcttctacagcatcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattctt |
23604923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 31 - 287
Target Start/End: Original strand, 23590474 - 23590728
Alignment:
| Q |
31 |
gtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaa |
130 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||| || |||| ||||||||||||||||||||||||||||||| |
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|
| T |
23590474 |
gtacttggaaagatgagagcaccacccaag--tgatgtaccaattactacccccaatgagctttctgagggtgatggttttgtctttggatttccaacaa |
23590571 |
T |
|
| Q |
131 |
gatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttcta |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
23590572 |
gatttggaatgatggctgctcaatttaaagcctttctagatgcaactggtggtctttggaaaacacaacagcttgtagggaagcctgccagaatcttcta |
23590671 |
T |
|
| Q |
231 |
cagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcga |
287 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23590672 |
caacactagttcccaaggcggtggacaagagactacagcgtaagagcctttactcga |
23590728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 23564535 - 23564476
Alignment:
| Q |
162 |
ctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccgg |
221 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23564535 |
ctttctagaagaaactgtaggtctatggaaaacaggacagcttgcagggaagcctgccgg |
23564476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 34339516 - 34339765
Alignment:
| Q |
28 |
gaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaa |
127 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| |||| || || |||||||| |||| |||||||||||||||||||| || |||| |
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|
| T |
34339516 |
gaggtgcttggaaagatgagtgcaccacccaagagtgatgtaccactcatcacaccaaatgaactgtctgagggtgatggttttgtctttggcttcccaa |
34339615 |
T |
|
| Q |
128 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatctt |
227 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
34339616 |
caagatttggaatgatggctgctcaattcaaagcttttcttgatgctactggtggtttgtggaaagcacaatcgcttgcaggcaagcctgccggaatctt |
34339715 |
T |
|
| Q |
228 |
ctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagc |
277 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
34339716 |
ctacagcactggttctcaaggtggaggacaagagactacagcgtaagagc |
34339765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 2649524 - 2649383
Alignment:
| Q |
126 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatc |
225 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||| | ||| ||||||| | |||||| ||||| | |||||||| |||||||| || ||| |
|
|
| T |
2649524 |
aacaagatttggaatgatggctactcaattcaaagcatttatggatacaactggagacctatggtgcacacagaaacttgcaggaaagcctgctggcatc |
2649425 |
T |
|
| Q |
226 |
ttctacagcaccagttcccaaggcggtggccaagagactaca |
267 |
Q |
| |
|
|| |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
2649424 |
ttttacagcactgcttgtcaaggaggtggccaagaaactaca |
2649383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 2645735 - 2645619
Alignment:
| Q |
102 |
tgatggttttgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacag |
201 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||| |||||||||| ||||||| || |||| ||| | ||||||||||| || ||||||| | |||| |
|
|
| T |
2645735 |
tgatggttttttgtttggttttccagcaagatatggaatgatgtctgctcaattcaaagtattttttgatgcaactggaagtttatggaacaaacaaaca |
2645636 |
T |
|
| Q |
202 |
cttgcagggaagcctgc |
218 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
2645635 |
cttgcaggaaagcctgc |
2645619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 267
Target Start/End: Original strand, 36461617 - 36461849
Alignment:
| Q |
35 |
ttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaagatt |
134 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||| ||||| ||||| || ||| ||| |||| | ||||||||| | |||| || || |||||||| |
|
|
| T |
36461617 |
ttgggaagatgggaggacctccaaagagtgatgtgccaattattacacctgatgcgctacctgaggctgatggtttgttgcttggcttcccgacaagatt |
36461716 |
T |
|
| Q |
135 |
tggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttctacagc |
234 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||||||| |||||| || || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
36461717 |
tggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgcaggaaagcctgcaggaatcttttacagc |
36461816 |
T |
|
| Q |
235 |
accagttcccaaggcggtggccaagagactaca |
267 |
Q |
| |
|
|| |||| || || || || |||||||||||| |
|
|
| T |
36461817 |
actggttctcagggaggaggacaagagactaca |
36461849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 36455339 - 36455400
Alignment:
| Q |
128 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatgg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |
|
|
| T |
36455339 |
caagatttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatgg |
36455400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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