View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_low_34 (Length: 359)
Name: NF0645_low_34
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 36 - 347
Target Start/End: Original strand, 52583711 - 52584039
Alignment:
| Q |
36 |
agttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaactctagcacttaatt------------cgaata |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52583711 |
agttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaata |
52583810 |
T |
|
| Q |
124 |
ctactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaag-----agaagaccaaccaacctcatccaacaatgaaatgagct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583811 |
ctactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagct |
52583910 |
T |
|
| Q |
219 |
ttgcaattttgacttgatgttcatgtttgtcagccaataaatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583911 |
ttgcaattttgacttgatgttcatgtttgtcagccaataaatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttct |
52584010 |
T |
|
| Q |
319 |
actcccatgaaacaacttctcagcatatt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
52584011 |
actcccatgaaacaacttctcagcatatt |
52584039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
59 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
101 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
59 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
58 |
tttttgttttaaaaataatttatacataaacacttat |
94 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3506 times since January 2019
Visitors: 4036