View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_37 (Length: 346)
Name: NF0645_low_37
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 11442339 - 11442592
Alignment:
| Q |
10 |
ataatactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11442339 |
ataacactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
11442438 |
T |
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| Q |
110 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaa |
209 |
Q |
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| T |
11442439 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgaggatgagaaaaaatgaa |
11442538 |
T |
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| Q |
210 |
ggatacaacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatact |
263 |
Q |
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| T |
11442539 |
gcatacaacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatact |
11442592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 11452912 - 11453166
Alignment:
| Q |
10 |
ataatactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
109 |
Q |
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|||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452912 |
ataacactcaatagtacaataggatagtaaattgaatttggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
11453011 |
T |
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| Q |
110 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaa |
209 |
Q |
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| T |
11453012 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagatgaggaatcaataagggctaaaaccccgtcatgagggtgagaaaaaatgaa |
11453111 |
T |
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| Q |
210 |
ggatacaacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatactg |
264 |
Q |
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| T |
11453112 |
ggaaacaacatcgagaaaagggtctgttggaaggttcctaggagactgtaaactg |
11453166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 37 - 264
Target Start/End: Complemental strand, 29911879 - 29911651
Alignment:
| Q |
37 |
taaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagttaacaaatttg |
136 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||||| |||||| |||| |
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| T |
29911879 |
taaattgaatttggaagtagaagcaaaacaacatcaccttgtgaaacacccattttgtgtaaagcagaagccatggatttgactaaaggtaacaactttg |
29911780 |
T |
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| Q |
137 |
agtaagaaatggaagtcccagataaggaatcaataagggctaaaa-ccccgtcatgtggatgagaaaaaatgaaggatacaacgtcgagaaaagggtcgg |
235 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||||| |||| ||||| | || |||||||||||||| |||| ||| ||||||||||| | |
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| T |
29911779 |
agtaagaaatggaagacccagatgaagaatcaataagggctaaaacccccatcatgagagtgtgaaaaaatgaaggaaacaatgtcaagaaaagggtcag |
29911680 |
T |
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| Q |
236 |
tcggaaggctcctaggagagtgtatactg |
264 |
Q |
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| T |
29911679 |
ttggaagatttctaggagtatgtatactg |
29911651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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