View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0645_low_38 (Length: 340)

Name: NF0645_low_38
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0645_low_38
NF0645_low_38
[»] chr2 (8 HSPs)
chr2 (37-268)||(28317659-28317894)
chr2 (169-239)||(45086011-45086081)
chr2 (185-239)||(23407775-23407829)
chr2 (169-238)||(24477503-24477572)
chr2 (171-239)||(22605963-22606031)
chr2 (169-239)||(10213861-10213931)
chr2 (179-230)||(40074065-40074116)
chr2 (184-250)||(11616689-11616755)
[»] chr5 (6 HSPs)
chr5 (173-239)||(36978754-36978820)
chr5 (185-250)||(29242123-29242188)
chr5 (185-241)||(9609526-9609582)
chr5 (169-239)||(39860969-39861039)
chr5 (198-263)||(4052914-4052979)
chr5 (169-250)||(30796813-30796894)
[»] chr7 (16 HSPs)
chr7 (182-263)||(2405227-2405308)
chr7 (169-261)||(5866260-5866352)
chr7 (169-261)||(23362332-23362424)
chr7 (208-261)||(12152767-12152820)
chr7 (169-250)||(25611378-25611459)
chr7 (170-239)||(40187403-40187472)
chr7 (170-250)||(6596190-6596270)
chr7 (169-257)||(9360785-9360873)
chr7 (169-239)||(4595056-4595126)
chr7 (169-250)||(3962309-3962390)
chr7 (169-238)||(9026607-9026676)
chr7 (169-241)||(30466711-30466783)
chr7 (184-239)||(42852023-42852078)
chr7 (169-250)||(14160507-14160588)
chr7 (205-257)||(8150863-8150915)
chr7 (169-261)||(35827610-35827702)
[»] chr1 (3 HSPs)
chr1 (169-250)||(48522207-48522288)
chr1 (199-261)||(26347415-26347477)
chr1 (198-263)||(25070828-25070893)
[»] chr8 (8 HSPs)
chr8 (181-261)||(14219800-14219880)
chr8 (169-250)||(11503084-11503165)
chr8 (169-250)||(25663548-25663629)
chr8 (184-250)||(32578109-32578175)
chr8 (182-239)||(10342418-10342478)
chr8 (185-239)||(32282869-32282923)
chr8 (177-239)||(36531187-36531249)
chr8 (206-250)||(31037715-31037759)
[»] chr4 (11 HSPs)
chr4 (170-253)||(25058316-25058399)
chr4 (173-239)||(22359267-22359333)
chr4 (169-238)||(17423849-17423918)
chr4 (169-250)||(26429207-26429288)
chr4 (169-250)||(35853202-35853283)
chr4 (184-261)||(48446704-48446781)
chr4 (182-239)||(12274236-12274293)
chr4 (184-239)||(9034943-9034998)
chr4 (184-239)||(26006111-26006166)
chr4 (183-266)||(28031561-28031644)
chr4 (184-250)||(2536994-2537060)
[»] chr6 (6 HSPs)
chr6 (169-250)||(32957481-32957562)
chr6 (169-239)||(7435642-7435712)
chr6 (169-239)||(7597603-7597673)
chr6 (179-257)||(13406171-13406249)
chr6 (169-239)||(34183147-34183217)
chr6 (184-261)||(7608536-7608613)
[»] chr3 (9 HSPs)
chr3 (194-263)||(7622703-7622772)
chr3 (173-261)||(43018359-43018447)
chr3 (184-239)||(51951994-51952049)
chr3 (169-257)||(21689780-21689868)
chr3 (184-239)||(8457955-8458010)
chr3 (172-239)||(39383498-39383565)
chr3 (177-239)||(26400227-26400289)
chr3 (184-241)||(39133716-39133773)
chr3 (169-238)||(55218673-55218742)
[»] scaffold0360 (1 HSPs)
scaffold0360 (184-238)||(5339-5393)
[»] scaffold0279 (1 HSPs)
scaffold0279 (184-250)||(6771-6837)
[»] scaffold0016 (1 HSPs)
scaffold0016 (184-250)||(187184-187250)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-239)||(216505-216575)
[»] scaffold0201 (1 HSPs)
scaffold0201 (199-250)||(20703-20754)
[»] scaffold0450 (1 HSPs)
scaffold0450 (185-239)||(5350-5404)
[»] scaffold0011 (1 HSPs)
scaffold0011 (183-239)||(58457-58513)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 28317659 - 28317894
Alignment:
Q  37 agcagagatgagagtgttacattacatattggtaagactaaaacttaagggcacattgaataaaaaaaa---cttattatacaacatcatata-agttca 132  Q
    ||||||||||||||| || ||||||||||||||||||||||  ||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||    
T  28317659 agcagagatgagagtattgcattacatattggtaagactaa--cttaagggcgcattgaataaaaaaaaaagcttattatacaacatcatataaagttca 28317756  T
Q  133 cnnnnnnnnnnnnnnnnnnntt--tgtaataatacatactagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctct 230  Q
    |                    |  ||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  28317757 caaaaaaaaaaatacaaaaaatattgtaataatacataccaaagtggttttgtgtcatgataattttcatatttatattaagatttcatcttatatctct 28317856  T
Q  231 actattattttaaataaaatataataaatttttcctgt 268  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  28317857 actattattttaaataaaatgcaataaatttttcctgt 28317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 45086081 - 45086011
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| |||| |||||| || ||| |||||| |||||| ||||||||||||||||||||||||||||    
T  45086081 ctagagtggcttcgcgtcatgctagtttccatattcatattaggattccatcttatatctctactattatt 45086011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 23407829 - 23407775
Alignment:
Q  185 tcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||| || ||| |||||| |||||||||||||||||||||||||||||||||||    
T  23407829 tcatgctagtttccatattcatattaagattccatcttatatctctactattatt 23407775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 24477572 - 24477503
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattat 238  Q
    ||||||||| || | || ||| || |||||||||| |||||| |||||||||||||||||||||||||||    
T  24477572 ctagagtggctttgcgttatgctagttttcatattcatattaggattccatcttatatctctactattat 24477503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 22605963 - 22606031
Alignment:
Q  171 agagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||||||| | |||||| || |||||||||| |||||| ||||||||||| ||||||||| ||||||    
T  22605963 agagtggttttgcgtcatgctagttttcatattcatattaggattccatcttgtatctctacaattatt 22606031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 10213861 - 10213931
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||| |||| |||| |||||| || ||| |||||| ||||||||||| |||||| ||||||||||||||||    
T  10213861 ctagggtggcttcgcgtcatgctagtttccatattcatattaagatttcatcttgtatctctactattatt 10213931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 40074116 - 40074065
Alignment:
Q  179 ttcgtgtcatgatatttttcatatttatattaagattccatcttatatctct 230  Q
    |||| |||||| || |||||||||| |||||||||||||||||| |||||||    
T  40074116 ttcgcgtcatgctagttttcatattcatattaagattccatcttgtatctct 40074065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 11616689 - 11616755
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| || ||| |||||| |||||| ||||| ||||| |||||||||||||||||| ||| ||||    
T  11616689 gtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaat 11616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 36978754 - 36978820
Alignment:
Q  173 agtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||||||| |||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  36978754 agtggtttcgcgtcatgctagttttcatatttatattaggattccatcttgtatctctactattatt 36978820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 29242188 - 29242123
Alignment:
Q  185 tcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||| || ||| ||||||||||||| |||||||| || |||||||||||||||||| ||| ||||    
T  29242188 tcatgctagtttccatatttatattaggattccatattgtatctctactattattttgaatgaaat 29242123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 9609582 - 9609526
Alignment:
Q  185 tcatgatatttttcatatttatattaagattccatcttatatctctactattatttt 241  Q
    ||||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||||    
T  9609582 tcatgctagtttccatattcatattaggattccatcttgtatctctactattatttt 9609526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 39860969 - 39861039
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||| |||| |||| |||||| || ||| |||||| |||||| ||||| ||||| ||||||||||||||||    
T  39860969 ctagggtggcttcgcgtcatgctagtttccatattcatattatgattcaatcttgtatctctactattatt 39861039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 4052914 - 4052979
Alignment:
Q  198 catatttatattaagattccatcttatatctctactattattttaaataaaatataataaattttt 263  Q
    |||||| || ||| ||||||||||||||||||||| |||||| | ||| ||||  |||||||||||    
T  4052914 catattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttt 4052979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 30796894 - 30796813
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | ||| || || ||| |||||| |||||| |||||||||||  ||||||||||||||||| ||| ||||    
T  30796894 ctagagtggctttgcgtcttgctagtttccatattcatattaggattccatcttgcatctctactattattttgaatgaaat 30796813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 2405227 - 2405308
Alignment:
Q  182 gtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattttt 263  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||  ||||||| ||||| ||||| ||||| |||||    
T  2405227 gtgtcatgctagttttcgtatttatattaagattccatcttatatctctcatattattataaatgaaatacaataagttttt 2405308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 5866260 - 5866352
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    ||||||||| ||||||||||| || ||| |||||| |||||| |||| |||||| |||||||||||||||| | ||| ||||  |||||||||    
T  5866260 ctagagtggcttcgtgtcatgttaatttccatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataaattt 5866352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 23362332 - 23362424
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||  |||||||||    
T  23362332 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataaattt 23362424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 12152767 - 12152820
Alignment:
Q  208 ttaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||    
T  12152767 ttaagattccatcgtatatctctactattattttaaatgaaatgcaataaattt 12152820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 25611459 - 25611378
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  25611459 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 25611378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 40187403 - 40187472
Alignment:
Q  170 tagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||||| | ||| || || |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  40187403 tagagtggttttgcgtcttgctagttttcatattcatattaggattccatcttgtatctctactattatt 40187472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 6596190 - 6596270
Alignment:
Q  170 tagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||||| | |||||| || ||| |||||| |||||| ||||||||||| ||| |||||||||||||| ||| ||||    
T  6596190 tagagtggttttgcgtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaat 6596270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 9360785 - 9360873
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataa 257  Q
    ||||||| |||| | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||| | ||| ||||| |||||    
T  9360785 ctagagtagttttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatacaataa 9360873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 4595126 - 4595056
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||||||  ||||||| || ||| |||||| |||||| |||| |||||| ||||||||||||||||    
T  4595126 ctagagtggttttctgtcatgctagtttccatattcatattaggatttcatcttgtatctctactattatt 4595056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 3962390 - 3962309
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| ||||||  ||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  3962390 ctagagtggctttgcgtcatgctagtttccatattcgtattaggattccatcttgtatctctactattattttgaatgaaat 3962309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 9026607 - 9026676
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattat 238  Q
    ||||||||| || | |||||| || ||| |||||| |||||||||||||||||| |||||||| ||||||    
T  9026607 ctagagtggatttgcgtcatgctaatttccatattcatattaagattccatcttgtatctctattattat 9026676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 30466711 - 30466783
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatttt 241  Q
    ||||||||| || | || ||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||||    
T  30466711 ctagagtggctttgcgttatgctagtttccatattcatattaggattccatcttgtatctctactattatttt 30466783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 42852023 - 42852078
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| || ||| |||||| |||||| |||||||||||||||||||| |||||||    
T  42852023 gtcatgttagtttccatattcatattaggattccatcttatatctctattattatt 42852078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 14160507 - 14160588
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| | |||| |||||| |||||| |||| |||||||||||||||||| ||| ||||    
T  14160507 ctagagtggctttgcgtcatgctagtttgcgtattcatattaggattccttcttgtatctctactattattttgaatgaaat 14160588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 8150915 - 8150863
Alignment:
Q  205 atattaagattccatcttatatctctactattattttaaataaaatataataa 257  Q
    |||||| ||||||||||| |||||||||||||||| | ||| |||| ||||||    
T  8150915 atattaggattccatcttgtatctctactattattatgaatgaaatgtaataa 8150863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 35827610 - 35827702
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    ||||| ||| ||| ||||||| || ||| |||||| ||||||||||| |||||| |||||||  |  |||| ||||||||||  |||||||||    
T  35827610 ctagaatggattcatgtcatgctaatttccatattcatattaagatttcatcttgtatctctctttatattataaataaaatgcaataaattt 35827702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 48522207 - 48522288
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  48522207 ctagagtggctttgcgtcatgctagtttccatattcatattaagattccatcttatatctctactattattataaatgaaat 48522288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 26347415 - 26347477
Alignment:
Q  199 atatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    |||||||||||| ||||||||||| |||||||||||||||| | ||||||||| |||||||||    
T  26347415 atatttatattatgattccatcttgtatctctactattattatgaataaaataaaataaattt 26347477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 25070893 - 25070828
Alignment:
Q  198 catatttatattaagattccatcttatatctctactattattttaaataaaatataataaattttt 263  Q
    |||||| || ||| ||||||||||||||||||||| |||||| | ||| ||||  |||||||||||    
T  25070893 catattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttt 25070828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 14219880 - 14219800
Alignment:
Q  181 cgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    ||||||||| || ||| |||||| ||||||||||| || |||| || |||||||||||||||||| ||||| |||||||||    
T  14219880 cgtgtcatgttagtttccatattcatattaagatttcagcttacatttctactattattttaaatgaaatacaataaattt 14219800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 11503165 - 11503084
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  11503165 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 11503084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 25663548 - 25663629
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| |||||| |||||| |||||| ||||||||||| ||||||| |||||||||| ||| ||||    
T  25663548 ctagagtggatttgcgtcatgctattttccatattcatattaggattccatcttgtatctctcctattattttgaatgaaat 25663629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 32578109 - 32578175
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  32578109 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 32578175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 10342418 - 10342478
Alignment:
Q  182 gtgtcatgatatttttcatatttatattaa---gattccatcttatatctctactattatt 239  Q
    |||||||| || |||||||||| ||||||    ||||||||||||||||||||||||||||    
T  10342418 gtgtcatgctagttttcatattcatattattaggattccatcttatatctctactattatt 10342478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 32282923 - 32282869
Alignment:
Q  185 tcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  32282923 tcatgctagtttccatattcatattaggattccatcttgtatctctactattatt 32282869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 36531187 - 36531249
Alignment:
Q  177 gtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||| |||||||| || ||| |||||| |||||| ||||||||||| | ||||||||||||||    
T  36531187 gttttgtgtcatgctaatttccatattcatattaggattccatcttgtttctctactattatt 36531249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 31037759 - 31037715
Alignment:
Q  206 tattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||    
T  31037759 tattaaaattccatcttgtatctctactattattttgaatgaaat 31037715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 25058399 - 25058316
Alignment:
Q  170 tagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatata 253  Q
    |||| ||| |||| |||||| || ||| |||||| |||||||||||| ||||| |||||||||||||||| | |||||||||||    
T  25058399 tagactggcttcgcgtcatgttagtttccatattcatattaagattcaatcttgtatctctactattattatgaataaaatata 25058316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 22359333 - 22359267
Alignment:
Q  173 agtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||| || |||||||| || ||| |||||| |||||||||||||||||| ||||||||||||||||    
T  22359333 agtggctttgtgtcatgctagtttccatattcatattaagattccatcttgtatctctactattatt 22359267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 17423918 - 17423849
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattat 238  Q
    ||||||||| |||| |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||    
T  17423918 ctagagtggcttcgagtcatgctagtttccatattcatattaggattccatcttgtatctctactattat 17423849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 26429288 - 26429207
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  26429288 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 26429207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 35853202 - 35853283
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  35853202 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaattaaat 35853283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 48446704 - 48446781
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    |||||| || ||| |||||| |||||| | |||||||||||||||||||||||||| | ||| ||||| |||||||||    
T  48446704 gtcatgctagtttccatattcatattatggttccatcttatatctctactattattatgaatgaaatacaataaattt 48446781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 12274236 - 12274293
Alignment:
Q  182 gtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||||| || |||  |||||||||||| ||||||||||| ||||||||||||||||    
T  12274236 gtgtcatgttagtttctatatttatattaggattccatcttgtatctctactattatt 12274293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 9034943 - 9034998
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  9034943 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattatt 9034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 26006166 - 26006111
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  26006166 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattatt 26006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 28031561 - 28031644
Alignment:
Q  183 tgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaatttttcct 266  Q
    ||||||| || ||||| |||||  ||| | ||| |||||| |||||||||| |||||||||||||||| || ||| ||||||||    
T  28031561 tgtcatgctagttttcgtattttcattcaaatttcatcttgtatctctacttttattttaaataaaatgtattaagtttttcct 28031644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 2537060 - 2536994
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| || ||| |||||| || ||| ||||||||||| |||||||||||||||| | ||||||||    
T  2537060 gtcatgctagtttccatattcatgttaggattccatcttgtatctctactattattatgaataaaat 2536994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 32957481 - 32957562
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  32957481 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 32957562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 7435712 - 7435642
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  7435712 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattatt 7435642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 7597603 - 7597673
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| || | || ||| || |||||||||| |||||| |||||||||||||||||||||| |||||    
T  7597603 ctagagtggctttgcgtgatgctagttttcatattcatattaggattccatcttatatctctactcttatt 7597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 13406171 - 13406249
Alignment:
Q  179 ttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataa 257  Q
    |||| |||||| || ||| |||| | |||||||||||| ||| | |||||||||| ||||||||||| ||||| |||||    
T  13406171 ttcgagtcatgctagtttccataatcatattaagattcgatcgtgtatctctactcttattttaaatgaaatacaataa 13406249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 34183217 - 34183147
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| || | |||||| || ||||||||||||||||  |||| |||||| ||||||||||| ||||    
T  34183217 ctagagtggctttgcgtcatgttagttttcatatttatattgggatttcatcttgtatctctactactatt 34183147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 7608536 - 7608613
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    |||||| || ||| |||||| ||||||  |||||||||| |||||||||||||||| | ||| ||||  |||||||||    
T  7608536 gtcatgctagtttccatattcatattataattccatcttgtatctctactattattatgaatgaaatgcaataaattt 7608613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 7622703 - 7622772
Alignment:
Q  194 ttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattttt 263  Q
    |||||||||| |||||| |||| |||||| |||||||||||||||| ||||| ||||  |||||||||||    
T  7622703 ttttcatattcatattaggatttcatcttgtatctctactattattataaatgaaatgcaataaattttt 7622772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 43018447 - 43018359
Alignment:
Q  173 agtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataaattt 261  Q
    |||||||| | |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||| | ||| ||||  |||||||||    
T  43018447 agtggttttgcgtcatgctagtttccatattcatattatgattccatcttgtatctctactattattatgaatgaaatgcaataaattt 43018359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 51951994 - 51952049
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| || |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  51951994 gtcatgctagttttcatattcatattaggattccatcttgtatctctactattatt 51952049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 21689780 - 21689868
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaatataataa 257  Q
    ||||||||| || | |||||| || ||| |||||| |||||| |||| |||||| |||||||||||||||| | ||| ||||| |||||    
T  21689780 ctagagtggctttgcgtcatgttagtttccatattcatattatgatttcatcttgtatctctactattattatgaatgaaatacaataa 21689868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 8457955 - 8458010
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| || |||||||||| |||||| |||| |||||| ||||||||||||||||    
T  8457955 gtcatgctagttttcatattcatattaggatttcatcttgtatctctactattatt 8458010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 39383498 - 39383565
Alignment:
Q  172 gagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| | |||||| || ||| |||||| |||||| |||||||| || ||||||||||||||||    
T  39383498 gagtggttttgcgtcatgttaatttccatattcatattatgattccattttgtatctctactattatt 39383565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 26400227 - 26400289
Alignment:
Q  177 gtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    |||||| |||||| || ||| |||||| |||||| |||||||| || ||||||||||||||||    
T  26400227 gtttcgcgtcatgctagtttccatattcatattatgattccatattgtatctctactattatt 26400289  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 39133716 - 39133773
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattatttt 241  Q
    |||||| || ||| |||||| |||||| ||||| ||||| ||||||||||||||||||    
T  39133716 gtcatgctagtttccatattcatattaggattcaatcttgtatctctactattatttt 39133773  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 55218742 - 55218673
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattat 238  Q
    ||||||||| || | |||||| || ||| |||||| |||||| ||||||||||| || ||||||||||||    
T  55218742 ctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtacctctactattat 55218673  T

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Target: scaffold0360 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 5393 - 5339
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattat 238  Q
    |||||| || |||| ||||| |||||||||||||||||| |||||||||||||||    
T  5393 gtcatgttagtttttatattcatattaagattccatcttgtatctctactattat 5339  T

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Target: scaffold0279 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 6771 - 6837
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  6771 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 6837  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 187184 - 187250
Alignment:
Q  184 gtcatgatatttttcatatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    |||||| || ||| |||||| |||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  187184 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaat 187250  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 216505 - 216575
Alignment:
Q  169 ctagagtggtttcgtgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||||| || | | |||| || |||||||||| |||||| |||||||||| |||||||||||||||||    
T  216505 ctagagtggctttgcgccatgctagttttcatattcatattaggattccatctaatatctctactattatt 216575  T

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Target: scaffold0201 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 20703 - 20754
Alignment:
Q  199 atatttatattaagattccatcttatatctctactattattttaaataaaat 250  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  20703 atattcatattaagattacatcttgtatctctactattattataaatgaaat 20754  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 5350 - 5404
Alignment:
Q  185 tcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||| || ||| |||||| ||||||| |||||||||| ||||||||||||||||    
T  5350 tcatgctaatttccatattcatattaaaattccatcttgtatctctactattatt 5404  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 58457 - 58513
Alignment:
Q  183 tgtcatgatatttttcatatttatattaagattccatcttatatctctactattatt 239  Q
    ||||||| || ||| |||||| |||||| | ||||||||| ||||||||||||||||    
T  58457 tgtcatgctagtttccatattcatattagggttccatcttgtatctctactattatt 58513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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