View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_39 (Length: 329)
Name: NF0645_low_39
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 21194331 - 21194164
Alignment:
| Q |
1 |
ttgccatggtgtgtgaacaagggagtgatccactttctaatattgttggatttattaaaccatctacacttgtcattggtcctgaaagtagcattggtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21194331 |
ttgccatggtgtgtgaacaagggagtgatccactttctaatattgttggatttattaaaccatctacacttgtcattggtcctgaaagtagcattgatgc |
21194232 |
T |
|
| Q |
101 |
tgctgatgttgttgttgatgccattgcttttgctgttggtggtagagcatggttatgttgtccttcat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21194231 |
tgctgatgttgttgttgatgccattgcttttgctgttggtggtagagcatggttatgttgtccttcat |
21194164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 8496882 - 8496990
Alignment:
| Q |
60 |
ccatctacacttgtcattggtcctgaaagtagcattggtgctgctgatgttgttgttgatgccattgcttttgctgttggtggtagagcatggttatgtt |
159 |
Q |
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|||||| |||||| ||||| |||||| |||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| | |||||||||| |
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| T |
8496882 |
ccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctggtggtagtggatggttatgtg |
8496981 |
T |
|
| Q |
160 |
gtccttcat |
168 |
Q |
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|||||||| |
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|
| T |
8496982 |
ttccttcat |
8496990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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