View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_low_41 (Length: 323)
Name: NF0645_low_41
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_41 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 163166 - 162942
Alignment:
| Q |
29 |
atgattttcctatatacttttgttataggaacgatacatgtgtt-tagtaaaaagttgaaaatgtactaaattttgtgcgcaactttgaggcatttcaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163166 |
atgattttcctatatacttttgttgtagggacgatacatgtgttatagtaaaaaaatgaaaatgtactaaattttgtgcgcaactttgaggcatttcaaa |
163067 |
T |
|
| Q |
128 |
ggaagtggtgaagagacaataaaaagaggataatatttatggacactcaccaccaaaataaaactgtatacttttgaatatgtactttgggagctttcat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
163066 |
ggaagtggtgaagagacaataaaaagaggataatatttatggtcactcaccagcaaaatagaattgtatacctttgaatatgtactttgggagctttcat |
162967 |
T |
|
| Q |
228 |
gttttccttatattaatttcttgct |
252 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
162966 |
gttttccttatattaatttcatgct |
162942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 48552824 - 48552602
Alignment:
| Q |
29 |
atgattttcctatatacttttgttataggaacgatacatgtgtt-tagtaaaaagt-tgaaaatgtactaaattttgtgcgcaactttgaggcatttcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48552824 |
atgattttcctatatacttttgttgtagggacgatgcatgtgttatagtaaaaaaaatgaaaatgtactaaattttgtgcgcaactttgaggcatttcaa |
48552725 |
T |
|
| Q |
127 |
aggaagtggtgaagagacaataaaaagaggataatatttatggacactcaccaccaaaataaaactgtatacttttgaatatgtactttgggagctttca |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48552724 |
aggaagtggtgaagagacaataaaaagaggataatatttatggtcact---caccaaaatagaactgtatacctttgaatatgtactttgggagctttca |
48552628 |
T |
|
| Q |
227 |
tgttttccttatattaatttcttgct |
252 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
48552627 |
tgttttccttatattaatttcatgct |
48552602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 40051297 - 40051520
Alignment:
| Q |
29 |
atgattttcctatatacttttgttataggaacgatacatgtgtt-tagtaaaaagttgaaaatgtactaaattttgtgcgcaactttgaggcatttcaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40051297 |
atgattttcctatatacttttgttgtagggacgatgcatgtgttatagtaaaaaaatgaaaatgtactaaattttgtgcgcaactttgaggcatttcaaa |
40051396 |
T |
|
| Q |
128 |
ggaagtggtgaagagacaataaaaagaggataatatttatggacactcaccaccaaaataaaactgtatacttttga--atatgtactttgggagctttc |
225 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
40051397 |
ggaagaggtgatgagacaataaaaagaggataatatttatggtcact---caccaaaatagaactgtatacctttgagtatatgtactttgggagctttc |
40051493 |
T |
|
| Q |
226 |
atgttttccttatattaatttcttgct |
252 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
40051494 |
atgttttccttatattaatttcatgct |
40051520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 22431682 - 22431896
Alignment:
| Q |
32 |
attttcctatatacttttgttataggaacgatacatgtgtt-tagtaaaaagt-tgaaaatgtactaaattttgtgcgcaactttgaggcatttcaaagg |
129 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22431682 |
attttcctatatacttttgttgtagggacgatacatgtgttatagtaaaaaaaatgaaaatgtactaaattttgtgcgcaactttaaggcatttcaaagg |
22431781 |
T |
|
| Q |
130 |
aagtggtgaagagacaataaaaagaggataatatttatggacactcaccaccaaaataaaactgtatacttttgaatatgtactttgggagctttcatgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
22431782 |
aagtggtgaagagacaataaaaagaggataatattcatggtcact---caccaaaatagaactgtatacatttgaatatgtattttgggagctttcatgt |
22431878 |
T |
|
| Q |
230 |
tttccttatattaatttc |
247 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22431879 |
tttccttatattaatttc |
22431896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3251 times since January 2019
Visitors: 4030