View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_43 (Length: 318)
Name: NF0645_low_43
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 63 - 288
Target Start/End: Complemental strand, 38275417 - 38275192
Alignment:
| Q |
63 |
ttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatgtttgttatccacgtctctaggtgtcaat |
162 |
Q |
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| T |
38275417 |
ttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatgtttgttatccacgtctctaggtgtcaat |
38275318 |
T |
|
| Q |
163 |
gtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatgtggttatagttttcggttctcttttatt |
262 |
Q |
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| T |
38275317 |
gtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatgtggttatagttttcggttctcttttatt |
38275218 |
T |
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| Q |
263 |
tcatcaaattcccttgtttgtctgtg |
288 |
Q |
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| T |
38275217 |
tcatcaaattcccttgtttgtgtgtg |
38275192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 36870555 - 36870449
Alignment:
| Q |
124 |
tcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaag |
223 |
Q |
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||||||||||||||||| | |||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||| ||||||||||| |||||||| |
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| T |
36870555 |
tcggtaagatgtttgttcttcacgtctctaggtgtcaatgcatttcaagtgttctctgttatgcttttagatttgagaattctgagatgatgcaaggaag |
36870456 |
T |
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| Q |
224 |
aatggat |
230 |
Q |
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||||||| |
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| T |
36870455 |
aatggat |
36870449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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