View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0645_low_46 (Length: 288)

Name: NF0645_low_46
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0645_low_46
NF0645_low_46
[»] chr3 (1 HSPs)
chr3 (29-279)||(9213706-9213956)
[»] chr4 (9 HSPs)
chr4 (38-279)||(25159998-25160239)
chr4 (36-279)||(25180225-25180468)
chr4 (36-279)||(25168557-25168800)
chr4 (36-279)||(25252466-25252709)
chr4 (203-274)||(24986310-24986381)
chr4 (203-274)||(25000782-25000853)
chr4 (203-274)||(25046713-25046784)
chr4 (206-274)||(25189340-25189408)
chr4 (33-91)||(25046543-25046601)
[»] chr2 (3 HSPs)
chr2 (33-169)||(42156548-42156684)
chr2 (33-168)||(42167035-42167170)
chr2 (208-279)||(42167210-42167281)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 9213956 - 9213706
Alignment:
Q  29 acatacctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213956 acatacctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccg 9213857  T
Q  129 gtgcaatttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaaccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213856 gtgcaatttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaaccc 9213757  T
Q  229 aatatttcaccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9213756 aatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtctt 9213706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 25159998 - 25160239
Alignment:
Q  38 atactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaattt 137  Q
    ||||||| ||||||||||||  || ||| ||||||| || ||||||||||| ||||| || | ||||||||| |||||||||||||| || || ||||||    
T  25159998 atactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagggctcgatcgcagaatcaccgccagtacaattt 25160097  T
Q  138 ggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatatttca 237  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || |||||||| || ||||||||||||||||| || |    
T  25160098 ggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagctccatggctcgttcaaagtaacccaatacttga 25160197  T
Q  238 ccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
    | ||||||||||| ||||| || |||||||| ||||| ||||    
T  25160198 ctctatcaccaaattccttgaaacaaagttccgcatagtctt 25160239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 279
Target Start/End: Original strand, 25180225 - 25180468
Alignment:
Q  36 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 135  Q
    ||||| || |||||||||||||| |||||| | ||||||||||||||||| || ||||  |||| ||| || ||  |  ||||||| |||||||||||||    
T  25180225 tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaat 25180324  T
Q  136 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 235  Q
    ||||||| ||||||  |||||| |||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |||    
T  25180325 ttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggctcattcaaagttatccaatgttt 25180424  T
Q  236 caccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
     || ||||| |||||    |||||||||||||| ||||| ||||    
T  25180425 tactctatctccaaatgttttaaagcaaagttccgcatagtctt 25180468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 279
Target Start/End: Original strand, 25168557 - 25168800
Alignment:
Q  36 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 135  Q
    |||||||| |||||||||| ||| ||| || | ||||||||||||||||| || ||||  |||| ||| || ||| |  |||||||||| ||||||||||    
T  25168557 tgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatgtgcaactaaataaggttcagttccagaatcaccgccggtgcaat 25168656  T
Q  136 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 235  Q
    ||||||||||||||  ||| || ||||| |||||||||   ||||||||||| |||| |||||||||| ||||||||||||||||||| | ||||| |||    
T  25168657 ttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttt 25168756  T
Q  236 caccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
     || ||||| |||||    || ||||||||||| ||||| ||||    
T  25168757 tactctatctccaaatgttttgaagcaaagttccgcatagtctt 25168800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 279
Target Start/End: Complemental strand, 25252709 - 25252466
Alignment:
Q  36 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 135  Q
    |||||||| |||||||||| ||| ||| || | ||||||||||||||||| || ||||  |||| ||| || ||  |  |||||||||| ||||||||||    
T  25252709 tgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccgccggtgcaat 25252610  T
Q  136 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 235  Q
    ||||||||||||||  ||| || || ||||||||||||   ||||||||||| |||| |||||||||| ||||||||||||||||||| | ||||| |||    
T  25252609 ttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttt 25252510  T
Q  236 caccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
     || ||||| |||||    || ||||||||||| ||||| ||||    
T  25252509 tactctatctccaaatgttttgaagcaaagttccgcatagtctt 25252466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 24986310 - 24986381
Alignment:
Q  203 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 274  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||  ||||||||||||||||    
T  24986310 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcata 24986381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 25000853 - 25000782
Alignment:
Q  203 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 274  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||| |||||||||||||||||    
T  25000853 actccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcata 25000782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 25046713 - 25046784
Alignment:
Q  203 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 274  Q
    ||||| ||||||||||||||||  ||||  |||||||||||||||||| ||||| |||||||| ||||||||    
T  25046713 actccttggttcattcaaagtagtccaacgtttcaccctatcaccaaattccttgaagcaaagatcagcata 25046784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 25189340 - 25189408
Alignment:
Q  206 ccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 274  Q
    ||||||||| || ||||||||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcata 25189408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 25046543 - 25046601
Alignment:
Q  33 acctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtg 91  Q
    ||||||||||| ||||||||||  ||||||||| | | |||||| ||||||||||||||    
T  25046543 acctgatacttggtcttgtacaattttacagctgcagaatgagcaagaagttggtagtg 25046601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 42156548 - 42156684
Alignment:
Q  33 acctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgc 132  Q
    |||||||||||  ||||||||||||  ||| || |||||||||| ||||||||||  || |  ||||| || |||||  || | ||||||||||||||||    
T  42156548 acctgatacttcttcttgtacacatggacaactgcggcatgagcgagaagttggtgatgcgaaactatgtaaggctctttccctgaatcaccaccggtgc 42156647  T
Q  133 aatttggattcaaccaactagaacaacgacctggtgc 169  Q
    |||||| | | |||||  ||||||| ||||| |||||    
T  42156648 aatttgaactaaaccatttagaacatcgaccaggtgc 42156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 42167035 - 42167170
Alignment:
Q  33 acctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgc 132  Q
    |||||||||||  ||||||||||||  |||||| |||||||||| ||||||||||  || |  || || || || ||  || | ||||||||| ||||||    
T  42167035 acctgatacttcttcttgtacacatcgacagctgcggcatgagcaagaagttggtgatgcgaaacaatgtaaggttctttccctgaatcaccatcggtgc 42167134  T
Q  133 aatttggattcaaccaactagaacaacgacctggtg 168  Q
    |||||| | |||||||  ||||||| ||||| ||||    
T  42167135 aatttgaactcaaccatttagaacatcgaccaggtg 42167170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 42167210 - 42167281
Alignment:
Q  208 atggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatattctt 279  Q
    |||| ||||| ||||||| |||||| ||||||||||| |||||||| || || |||||||| ||||| ||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtctt 42167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3650 times since January 2019
Visitors: 4039