View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_47 (Length: 286)
Name: NF0645_low_47
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46479013 - 46478765
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttg |
100 |
Q |
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| T |
46479013 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtttgtttgagtgtgccgtatttacccagaaaccccaaaatgaaaccagttg |
46478914 |
T |
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| Q |
101 |
atggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattc------ttatatgctacgaatcagtt |
194 |
Q |
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| T |
46478913 |
atggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattcttattcttatatgctacgaatcagtt |
46478814 |
T |
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| Q |
195 |
acagatgtgtttc--cacaaatttctgcttgaattattactcccctttg |
241 |
Q |
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| T |
46478813 |
acagatgtgtttctgcacaaatttctgcttgaattattactcccctttg |
46478765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 46494512 - 46494342
Alignment:
| Q |
2 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
101 |
Q |
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| T |
46494512 |
ttggttggtatctttgcttgtttcgccctgagagagttaaagcctatgtgtgtctcagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
46494413 |
T |
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| Q |
102 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttat |
172 |
Q |
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| T |
46494412 |
tggcatgcgagctttatttggagatgactattatatctgcagattccaggttcgaattcatatatttttat |
46494342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 46490215 - 46490063
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| || || ||| ||||||| |||||||||||||||||||| ||| ||||||| |||| |
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| T |
46490215 |
attggttggtatctttgtttgtttcgccctgaaagaatcaaagcctacgtgtgtctgagtgttccgtatttacccagaaacccaaaattgaaacctgttg |
46490116 |
T |
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| Q |
101 |
atggcatgcgagctttgtttggagatgattactatatctgcagattccaggtt |
153 |
Q |
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| T |
46490115 |
atggcatgcgagctgtgtatggtgatgattattatatctgcagattccaggtt |
46490063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 46516802 - 46516644
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttg |
100 |
Q |
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| T |
46516802 |
attggttggtatctttgtttgtttcgtcctgagaaagtcaaggcttatgtttgcctcagtgttccattgttaccaagaaaccccaaagtaaaacctgttg |
46516703 |
T |
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| Q |
101 |
atggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgtttt |
159 |
Q |
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| T |
46516702 |
atggcatgcaagctttgtttggtgacgattattatatctgcagattccaggtttgtttt |
46516644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46524509 - 46524456
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
54 |
Q |
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| T |
46524509 |
attggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46524456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46532062 - 46532009
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
54 |
Q |
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|
|||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
46532062 |
attggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46532009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 46520443 - 46520292
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttaccc--agaaaccccaaagtgaaaccagt |
98 |
Q |
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||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| | ||||| || ||||| || |||||||||| |||||| || | |
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| T |
46520443 |
attggttggtatctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtcttagtgttcc--atttaaccatagaaaccccacagtgaagcctat |
46520346 |
T |
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| Q |
99 |
tgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggt |
152 |
Q |
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|||||| | ||| ||| | |||||| ||||| |||||||||||||| ||||| |
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| T |
46520345 |
tgatggtaggcgtgctgcttatggagacgattattatatctgcagatttcaggt |
46520292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46326755 - 46326804
Alignment:
| Q |
1 |
attggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
50 |
Q |
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| T |
46326755 |
attggttggtatctttgtatgtttcgccctgaaagaatcaaagcctatgt |
46326804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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