View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0645_low_48 (Length: 273)

Name: NF0645_low_48
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0645_low_48
NF0645_low_48
[»] chr2 (2 HSPs)
chr2 (30-258)||(32598331-32598560)
chr2 (159-258)||(32598990-32599084)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 32598331 - 32598560
Alignment:
Q  30 tttattaccatcttttctgttgaatacttaatatctatcacgttttatttttnnnnnnnn-tattatgtattcaacaccaaagatgataaatacatgcta 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||| ||| |||||||||||||    
T  32598331 tttattaccatcttttgtgttgaatacttaatatctatcacgttttattttttaaaaaaaatattatgtattcaacacaaaaaatggtaaatacatgcta 32598430  T
Q  129 gatattaagtgcactaaagtggaaaacagaagaacaagcatgaaatatgaagtacaacgaggagaaggagctcattcaagagtctgaatattgtattgta 228  Q
    ||||||||||||| |||||| | |||||||| || |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| || ||||||||    
T  32598431 gatattaagtgcattaaagtaggaaacagaacaataagcatgaaatatgaagtacaatgaggagaagaagctccttcaagagtctgaacatcgtattgta 32598530  T
Q  229 ctaatctttttaaggttatttgtcgttgat 258  Q
    ||||||||||||| ||||||||||||||||    
T  32598531 ctaatctttttaacgttatttgtcgttgat 32598560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 32598990 - 32599084
Alignment:
Q  159 agaacaagcatgaaatatgaagtacaacgaggagaaggagctcattcaagagtctgaatattgtattgtactaatctttttaaggttatttgtcgttgat 258  Q
    |||||||||||| || |||||||||||||| ||| |||||||| ||||||||| ||||      || |||||||||||||||| ||||| |||| |||||    
T  32598990 agaacaagcatggaaaatgaagtacaacgaagaggaggagctccttcaagagtttgaa-----catggtactaatctttttaacgttatctgtcattgat 32599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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