View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_59 (Length: 251)
Name: NF0645_low_59
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1091521 - 1091323
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgtagattaaagttatgatttggcatgtattgagaattaaatgttggatcttatta |
100 |
Q |
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| T |
1091521 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgtagattgaagttatgatttggcatgtattgagaattaaatgttgcatcttatta |
1091422 |
T |
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| Q |
101 |
tgcttgtactcaattaatgagtcatttggtcacttaggttctatattttttatgttttaaaatagccgtagaattttagaaaaaagacatgttgctcaa |
199 |
Q |
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| T |
1091421 |
tgcttgtactcaattaatgagtcatttggtcacttaggttctatattttttatgttttaaaaaagccgtagaattttagaaaaaagacatgttgctcaa |
1091323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 36524140 - 36523952
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgtagattaaagttatgatttggcatgtattgagaattaaatgttggatcttatta |
100 |
Q |
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| T |
36524140 |
tattgttatttttgtatcttcggttgagaattatttatcttatttgttgattgaagttctgatttggcatgtattgagaattaaatgttggatcttatta |
36524041 |
T |
|
| Q |
101 |
tgcttgtactcaattaatgagtcatttggtcacttaggttctatattttttatgttttaaaatagccgtagaattttagaaaaaagacatgttgct |
196 |
Q |
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| T |
36524040 |
tgcttgtactcaattaatgagtcatttggtcacttaggttctatattt------ttttaaaa-agccgtagaattttagaaaaaagacatgttgct |
36523952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 12820814 - 12820938
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgtagattaaagttatgatttggcatgtattgagaattaaatgttggatcttatta |
100 |
Q |
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| T |
12820814 |
tattgttactcttgtatcttcgtttgagaattattgatcttatttgttggttaaagttctgatttggtatgtattgagaattaaatgttggatcttatta |
12820913 |
T |
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| Q |
101 |
tgcttgtactcaattaatgagtcat |
125 |
Q |
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|| |||| ||||||||||||||||| |
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| T |
12820914 |
tgtttgtgctcaattaatgagtcat |
12820938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 18100125 - 18099999
Alignment:
| Q |
75 |
tgagaattaaatgttggatcttattatgcttgtactcaattaatgagtcatttggtcacttaggttctatattttt--tatgttttaaaatagccgtaga |
172 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||||| || ||||||| | |
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| T |
18100125 |
tgagaattgaatgttggatcttattatgcttgtactcaattcatgagttatttggtcacttaggttttatattttttatatgttttataaaagccgtata |
18100026 |
T |
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| Q |
173 |
attttagaaaaaagacatgttgctcaa |
199 |
Q |
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| T |
18100025 |
attttagaaaaaagacatgttcctcaa |
18099999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 18095828 - 18095702
Alignment:
| Q |
75 |
tgagaattaaatgttggatcttattatgcttgtactcaattaatgagtcatttggtcacttaggttctatattttt--tatgttttaaaatagccgtaga |
172 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||||| || || |||| | |
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| T |
18095828 |
tgagaattgaatgttggatcttattatgcttgtactcaattcatgagttatttggtcacttaggttttatattttttatatgttttataaaagtcgtata |
18095729 |
T |
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| Q |
173 |
attttagaaaaaagacatgttgctcaa |
199 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
18095728 |
attttagaaaaaagacatgttcctcaa |
18095702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18095887 - 18095841
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgt |
47 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18095887 |
tattgttatttttgtatcttcggctgagaattattgatcttatttgt |
18095841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18100184 - 18100138
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttatttgt |
47 |
Q |
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| T |
18100184 |
tattgttatttttgtatcttcggctgagaattattgatcttatttgt |
18100138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 7708942 - 7709089
Alignment:
| Q |
1 |
tattgttatttttgtatcttcgcttgagaattattgatcttattt----gtagattaaagttatgatttggcatgtattgagaattaaatgttggatctt |
96 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||| || |||| || ||||||||||||||||| || |||||||| ||| ||||||||||| |
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| T |
7708942 |
tattgttattttcgtatctttgtttgagaattattgaactaatttatctgtttattaaagttatgatttgatatatattgagagttacatgttggatcta |
7709041 |
T |
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| Q |
97 |
attatgcttgtactcaa-ttaatgagtcatttggtcacttaggttcta |
143 |
Q |
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|||| | || |||||| ||||||||| ||||||||| |||||||||| |
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| T |
7709042 |
attagacatgaactcaatttaatgagttatttggtcagttaggttcta |
7709089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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