View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_61 (Length: 245)
Name: NF0645_low_61
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 10011145 - 10011352
Alignment:
| Q |
33 |
atggaagaaagaccaatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtcttt |
132 |
Q |
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| T |
10011145 |
atggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtcttt |
10011244 |
T |
|
| Q |
133 |
ttgttctatattctttctcgtttctgaagcagacgagnnnnnnnnnnnnnnnnnnncgaagggagacaaaaatgatttagaagagttggacatcaaattc |
232 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10011245 |
ttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattc |
10011344 |
T |
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| Q |
233 |
atatcagt |
240 |
Q |
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|||||||| |
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| T |
10011345 |
atatcagt |
10011352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
72 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
159 |
Q |
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|||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
72 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
159 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||| ||||| |||||| ||||| |||| |||||||||||||||||||||||| |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttctttaaaa-ttgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
72 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
159 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||| ||||| || ||||||||| |||| |||||||||||||||||||||||| |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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