View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_63 (Length: 237)
Name: NF0645_low_63
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3790973 - 3790877
Alignment:
| Q |
1 |
agttcttttatcaattaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtatt |
97 |
Q |
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| T |
3790973 |
agttcttttatcaattaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtatt |
3790877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3798384 - 3798480
Alignment:
| Q |
1 |
agttcttttatcaattaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtatt |
97 |
Q |
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| T |
3798384 |
agttattttatctattaaaagcaccatgccttctaaacttccaaagcttatagaagaagttaatgctttgaatgttgagagcaagatcaattgtatt |
3798480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3770863 - 3770777
Alignment:
| Q |
1 |
agttcttttatcaattaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagat |
87 |
Q |
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|||||| || ||||| ||||| | |||||||||| ||||| || |||||||||||||||||||||||| ||| ||| || ||||| |
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| T |
3770863 |
agttctcttctcaatcaaaagaaacatgcctcctttgcttcctaagcttatagaagaagttaatgctttggatgatgaaaataagat |
3770777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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