View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_7 (Length: 496)
Name: NF0645_low_7
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 298 - 485
Target Start/End: Complemental strand, 29416162 - 29415975
Alignment:
| Q |
298 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
397 |
Q |
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| T |
29416162 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
29416063 |
T |
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| Q |
398 |
tcatcaatctacaatcctagcggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcat |
485 |
Q |
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| T |
29416062 |
tcatcaatctacaatcctagaggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcat |
29415975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 29416430 - 29416262
Alignment:
| Q |
30 |
aaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatcattttccaaccaatgtgaagttccattctc |
129 |
Q |
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| T |
29416430 |
aaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatcattttccaaccaatgtgaagttccattctc |
29416331 |
T |
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| Q |
130 |
atcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctcttccaacaaaaa |
198 |
Q |
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| T |
29416330 |
atcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctcttccaacaaaaa |
29416262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 24655978 - 24656048
Alignment:
| Q |
30 |
aaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
100 |
Q |
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| T |
24655978 |
aaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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