View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_9 (Length: 461)
Name: NF0645_low_9
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 6412037 - 6411635
Alignment:
| Q |
30 |
aaagttttggcgaatccttcaatgagtacataacattttgtgaaggcatatatttcatcaaaactacacaaagac----ttctacttacaccaaagcaat |
125 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6412037 |
aaagttttggcgaatccttcaatgagtacagaacattttgtgaaggcatatatttcatcaaaactacacaaagacagacttctacttacaccaaagcaat |
6411938 |
T |
|
| Q |
126 |
atcaaaccaaattgagttggatttaaaccataaacaaaccccttataaaatcaggtggttttaggaatcagtttaaaaactannnnnnnn-ccaaaacct |
224 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
6411937 |
atcaaaccaaattgagttggatttaaaccataaccaaactccttataaaatcaggtggttttaggaatcagtttaaaaactatttttttttccaaagcct |
6411838 |
T |
|
| Q |
225 |
ggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagttttacatacttcttgtttcttatttgccaccc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411837 |
ggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagttttacatacttcttgtttcttatttgccaccc |
6411738 |
T |
|
| Q |
325 |
atcttaaaaaattacagacttcggcaaattattttgatcagttcactgaatcgtgctgttcaaatttaagcccatagcctattatatattgatattgagc |
424 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411737 |
atcttaaaaaattacagacttcggcaaattattttgatcagttcactgaatcgtgctgttcaaatttaagcccatagcctattatatattgatattgagc |
6411638 |
T |
|
| Q |
425 |
tta |
427 |
Q |
| |
|
||| |
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|
| T |
6411637 |
tta |
6411635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 6409286 - 6408968
Alignment:
| Q |
30 |
aaagttttggcgaatccttcaatgagtacataacattttgtgaaggcatatatttcatcaaaactacacaaagacttctacttacaccaaagcaatatca |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6409286 |
aaagttttggtgaatccttcaatgagtacagaacattttgtgaaggcatgtatttcatcaaaactacacaaagacttctacttacaccaaagcaatatca |
6409187 |
T |
|
| Q |
130 |
aaccaa--attgagttggattt-aaaccataaacaaaccccttataaaatcag-gtggttttaggaatcagtttaaaaac---tannnnnnnnccaaaac |
222 |
Q |
| |
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|||||| ||||||||||||| ||||||||| || ||||| || ||||||| ||||| | | ||||||||||||||| | ||||||| |
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| T |
6409186 |
aaccaatttttgagttggatttaaaaccataaccacacccccta-caaatcagtttggttatggaaatcagtttaaaaacttttttttttcttccaaaac |
6409088 |
T |
|
| Q |
223 |
ctggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagtttta------catacttcttgtttcttatt |
316 |
Q |
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|||||||||||||||||| || || |||||| |||| ||| |||||||||||||||||||||| || ||||||| || ||||||||||||||||| |
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| T |
6409087 |
ctggtgtgaacttagtaattgattgttgtaaactactaatttgtacaaaaccaggtttaaaatttcaagttttaacactgcaaacttcttgtttcttatt |
6408988 |
T |
|
| Q |
317 |
tgccacccatcttaaaaaat |
336 |
Q |
| |
|
|||| |||||||| |||| |
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|
| T |
6408987 |
cgccattcatcttaacaaat |
6408968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 6408529 - 6408489
Alignment:
| Q |
380 |
ctgttcaaatttaagcccatagcctattatatattgatatt |
420 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||| |
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| T |
6408529 |
ctgttccaatttaagcccatagcctattatatatcgatatt |
6408489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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