View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0646_low_1 (Length: 883)
Name: NF0646_low_1
Description: NF0646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0646_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 739; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 29 - 807
Target Start/End: Complemental strand, 31185741 - 31184963
Alignment:
| Q |
29 |
aataactacaggcaaattagtctccctctcagaacaagagctagtagattgtgacacaaaaggtgaagaccaaggatgcgaaggaggattaatggaagat |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185741 |
aataactacaggcaaactagtctccctctcagaacaagagctagtagattgtgacacaaaaggtgaagaccaaggatgcgaaggaggattaatggaagat |
31185642 |
T |
|
| Q |
129 |
ggatttgaatttatcattaaaaatggtggaattacaagtgagactaattacccttataaagcagcggatggaagttgtaacactgcaacaaccactcctg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185641 |
ggatttgaatttatcattaaaaatggtggaattacaagtgagactaattacccttataaagcagcggatggaagttgtaacactgcaacaaccactcctg |
31185542 |
T |
|
| Q |
229 |
tggctaagattacaggatatgagaaagttccggttaatagtgagatatcacttctcaaagctgtggcaaaccaaccaatatcagtttccattgatgctag |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31185541 |
tggctaagattacaggatatgagaaagttccagttaatagtgagaaatcacttctcaaagctgtggcgaaccaaccaatatcagtttccattgatgctag |
31185442 |
T |
|
| Q |
329 |
tgactcaagtttcatgttttactcaagtggaatttatacaggagaatgtggaactgagctagatcatggtgttactgctgttggatatggtagtgctaat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31185441 |
tgactcaagtttcatgttttactcaagtggaatttatacaggagaatgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgctaat |
31185342 |
T |
|
| Q |
429 |
ggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttgt |
528 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31185341 |
ggtactgattattggattgtgaagaattcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttat |
31185242 |
T |
|
| Q |
529 |
gtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaacatat |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31185241 |
gtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaacatat |
31185142 |
T |
|
| Q |
629 |
ggctacatgaatgtaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtatatg |
728 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185141 |
ggctacatgaatttaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtatatg |
31185042 |
T |
|
| Q |
729 |
ttcatctctatttctctgactttttaccttctacaacttacacatattaagacatgattgaaatttgaaacagtatatt |
807 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31185041 |
ttcatctttatttctctgaatttttaccttctacaacttacacatattaagacatgattgaaatttgaaacagtatatt |
31184963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 29 - 606
Target Start/End: Complemental strand, 31194568 - 31193991
Alignment:
| Q |
29 |
aataactacaggcaaattagtctccctctcagaacaagagctagtagattgtgacacaaaaggtgaagaccaaggatgcgaaggaggattaatggaagat |
128 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
31194568 |
aataactacaggaaaactaatctccctctcagaacaagagttagttgattgtgacacaaaaggtgaagatcaaggatgtgaaggaggattaatggaagat |
31194469 |
T |
|
| Q |
129 |
ggatttgaatttatcattaaaaatggtggaattacaagtgagactaattacccttataaagcagcggatggaagttgtaacactgcaacaaccactcctg |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
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|
| T |
31194468 |
ggatttgagtttatcattaaaaatggtggaattacaagtgagactaattacccttataaagcagctgatggaagttgtaacactgcaacaactgcccctg |
31194369 |
T |
|
| Q |
229 |
tggctaagattacaggatatgagaaagttccggttaatagtgagatatcacttctcaaagctgtggcaaaccaaccaatatcagtttccattgatgctag |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
31194368 |
tggctaagattacaggatatgagaaagttccggttaatagtgagatatcacttctcaaagctgtggcgaaccaaccaatatcagtttctattgatgcaag |
31194269 |
T |
|
| Q |
329 |
tgactcaagtttcatgttttactcaagtggaatttatacaggagaatgtggaactgagctagatcatggtgttactgctgttggatatggtagtgctaat |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
31194268 |
tgactcaagtttcatgttttactcaagtggaatttatacaggagaatgtggaactgagctagaccatggtgttactgctgttggttatggtagtgctaat |
31194169 |
T |
|
| Q |
429 |
ggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttgt |
528 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
31194168 |
gggactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgataaggaaggcttat |
31194069 |
T |
|
| Q |
529 |
gtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttt |
606 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||| |
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|
| T |
31194068 |
gtggtattgcaatggattcttcttatccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtatttt |
31193991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 490
Target Start/End: Complemental strand, 31176610 - 31176461
Alignment:
| Q |
344 |
gttttactcaagtggaatttatacaggagaatgtggaactgagctagatcatggtgttactgctgttggatatggtagtgc---taatggtactgattat |
440 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||||||||||| |||||||| ||||||| |||||| |||||| | | || |||||| ||| |
|
|
| T |
31176610 |
gttttactcaggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggtgtatcacttgattatactgagtat |
31176511 |
T |
|
| Q |
441 |
tggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacat |
490 |
Q |
| |
|
||| | || || ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
31176510 |
tggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacat |
31176461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 29733349 - 29733305
Alignment:
| Q |
339 |
ttcatgttttactcaagtggaatttatacaggagaatgtggaact |
383 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
29733349 |
ttcaagttttactcaagtgggatttttacaggagaatgtggaact |
29733305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 29746886 - 29746924
Alignment:
| Q |
345 |
ttttactcaagtggaatttatacaggagaatgtggaact |
383 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
29746886 |
ttttactcaagtggaatatttacaggagaatgtggaact |
29746924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 30056407 - 30056369
Alignment:
| Q |
345 |
ttttactcaagtggaatttatacaggagaatgtggaact |
383 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
30056407 |
ttttactcaagtggaatatttacaggagaatgtggaact |
30056369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 30072927 - 30072889
Alignment:
| Q |
345 |
ttttactcaagtggaatttatacaggagaatgtggaact |
383 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
30072927 |
ttttactcaagtggaatatttacaggagaatgtggaact |
30072889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 8899027 - 8899073
Alignment:
| Q |
57 |
tcagaacaagagctagtagattgtgacacaaaaggtgaagaccaagg |
103 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| ||||||||| |
|
|
| T |
8899027 |
tcagaacaagaacttgttgattgtgacacaaaaggtgtagaccaagg |
8899073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 31727185 - 31727231
Alignment:
| Q |
57 |
tcagaacaagagctagtagattgtgacacaaaaggtgaagaccaagg |
103 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| |
|
|
| T |
31727185 |
tcagaacaagaacttgttgattgtgacacaaatggtgaagaccaagg |
31727231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 31727566 - 31727636
Alignment:
| Q |
432 |
actgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaag |
502 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
31727566 |
actgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaag |
31727636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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