View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0646_low_12 (Length: 281)
Name: NF0646_low_12
Description: NF0646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0646_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 6134411 - 6134600
Alignment:
| Q |
34 |
agtgagatgaagagtcatatttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaatttttggataaagatgt |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6134411 |
agtgtgatgaagagtcatatttgatgaaaatggatgttgagctacatataagtgagatgatattgtatattcaatatcttaaatttttggataaagatgt |
6134510 |
T |
|
| Q |
134 |
agcaatgaaaccacttttgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgat |
223 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6134511 |
agtaatgaaaccacttgtgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgat |
6134600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 6121497 - 6121684
Alignment:
| Q |
34 |
agtgagatgaagagtcatatttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaa-tttttggataaagatg |
132 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||| ||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6121497 |
agtgtgatgaagagtcatatttcatgaaaatggatgttgagcaacatacaagcaagaagatgttgtatatccaatatcttaaattttttggataaagatt |
6121596 |
T |
|
| Q |
133 |
tagcaatgaaaccacttttgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgat |
220 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||||||||||| ||||| |||||| |||| ||||||||||| ||||||| ||||| |
|
|
| T |
6121597 |
tattgatgaaaccacttgtgtggttgtttacattctaatatggtgatcagaactcccctcataatccaatggttgtattagattcgat |
6121684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3115 times since January 2019
Visitors: 4028