View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0646_low_14 (Length: 237)
Name: NF0646_low_14
Description: NF0646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0646_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 9235651 - 9235429
Alignment:
| Q |
4 |
gtgttccatatcctctaattcttattacttgtaaagtttccccatttccatgacgaaattatgtgccttgtttcacataaaccacttttgaaattatgtg |
103 |
Q |
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| T |
9235651 |
gtgttccatatcctctaattcttattacttgtaaagtttccccatttccatgacgaaattatgtgccttgtttcacataaaccacttttgaaattatgtg |
9235552 |
T |
|
| Q |
104 |
cctggtagtcatgctagagttataatctgtgcttgtttaaattattccgnnnnnnnnagccctgttactttaggttcaagatttgatttgcttcatttgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |
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| T |
9235551 |
cctggtagtcatgctagagttataatctgtgcttgtttaaattattccgttttttctagctctattactttaggttcaagatttgatttgcttcatttgt |
9235452 |
T |
|
| Q |
204 |
ataaatgtctccctttagttcat |
226 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9235451 |
ataaatgtctccctttagttcat |
9235429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 9255874 - 9255780
Alignment:
| Q |
4 |
gtgttccatatcctctaattcttattacttgtaaagtttccccatttccatgacgaaattatgtgccttgtttc-acataaaccacttttgaaat |
97 |
Q |
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||||||||| |||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
9255874 |
gtgttccatgccctctaatcctgattacttgttaagtttccccatttccatgacggaattatgtgccttgtttcaacataaaccacttttgaaat |
9255780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 9255637 - 9255598
Alignment:
| Q |
187 |
tgatttgcttcatttgtataaatgtctccctttagttcat |
226 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
9255637 |
tgatttgctacatttgtataaatgtctccctttagttcat |
9255598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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