View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0646_low_8 (Length: 380)
Name: NF0646_low_8
Description: NF0646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0646_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 41091357 - 41091698
Alignment:
| Q |
10 |
tcataggtagagagatagagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaattaaactaac |
109 |
Q |
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| T |
41091357 |
tcataggtagagagatagagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaattaaactaac |
41091456 |
T |
|
| Q |
110 |
tatgaaacagtaataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatccccaacttggaaatgag |
209 |
Q |
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| T |
41091457 |
tataaaacagtgataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatccccaacttggaaatgag |
41091556 |
T |
|
| Q |
210 |
atgcagaatagggattttaggtagtgcttttttcaatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaagtttgaggaaactag |
309 |
Q |
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| T |
41091557 |
atgcagaatagggattttaggtagtgcttttttcaatgggtcagctagttgatgtttggagttgttatgatatgattgtgaacaagtttgaggaaactag |
41091656 |
T |
|
| Q |
310 |
aacaaacatattcccggataaaatcacaatcgaagtcgatat |
351 |
Q |
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| T |
41091657 |
aacaaacatattcccggataaaatcacaatcgaagtcgatat |
41091698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 351
Target Start/End: Original strand, 41101475 - 41101800
Alignment:
| Q |
26 |
agagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaattaaactaactatgaaacagtaataa |
125 |
Q |
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| T |
41101475 |
agagccatgaataaaagttgaaatcgagttttcttcgtattgaagtatatctcatgcaacaaggtgaacctaaattaaaccaactataaaacagtaataa |
41101574 |
T |
|
| Q |
126 |
cataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatat-atgtttgaaatccccaacttggaaatgagatgcagaatagggat |
224 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||| | ||| |||||||||||||||||||| ||| |||||| |
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| T |
41101575 |
cataaatgcaagaaatttgttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatgagatgctgaaaagggat |
41101674 |
T |
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| Q |
225 |
tttaggtagtgcttttttcaatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaagtttgaggaaactagaacaaacatattccc |
324 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41101675 |
ttt-ggtagtgcttttttcaatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtttgaggaaacaagaacaaacatattcca |
41101773 |
T |
|
| Q |
325 |
ggataaaatcacaatcgaagtcgatat |
351 |
Q |
| |
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| T |
41101774 |
ggataaaatcacaattgaagttgatat |
41101800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 351
Target Start/End: Original strand, 41080094 - 41080343
Alignment:
| Q |
98 |
aattaaactaactatg--aaacagtaataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatcccc |
195 |
Q |
| |
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||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| | |||||| |
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| T |
41080094 |
aattaaactaactatataaaacagttagaacataaatgcaacaaatatgttatattaaatatcccc-tcttaagttggaagatatatgttcaatatcccc |
41080192 |
T |
|
| Q |
196 |
aacttggaaatgagatgcagaatagggattttaggtagtgcttttttcaatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaag |
295 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||| | |||| |||||| |||||| |
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| T |
41080193 |
aactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagttcatgtctggagct--tatg---tgattgcgaacaaa |
41080287 |
T |
|
| Q |
296 |
tttgaggaaactagaacaaacatattcccggataaaatcacaatcgaagtcgatat |
351 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||| | |||||||| |
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| T |
41080288 |
tttgaggaaactagaacaaacatatttttggataaaatgacaatcaatgtcgatat |
41080343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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