View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0647_high_12 (Length: 251)
Name: NF0647_high_12
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 8477563 - 8477335
Alignment:
| Q |
18 |
tggacatcatcagcatattttggaagcatagatgtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8477563 |
tggacaacatcagcatattttggaagcatagaggtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataa |
8477464 |
T |
|
| Q |
118 |
aatttgcattcatatgaacatcttcataatctccaatcttaaggaatccttgagcttccttaacatattcaacaatagaattaaaatgttgcaaacaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8477463 |
aatttgcattcatatgaacatcttcataatctccaatcttaaggaatccttcagcttccttaacatattcaacaatagaattaaaatgttgcaaacaatt |
8477364 |
T |
|
| Q |
218 |
tccgtaatgagatttttcattcatatcac |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8477363 |
tccgtaatgagatttttcattcatatcac |
8477335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 8633722 - 8633818
Alignment:
| Q |
32 |
atattttggaagcatagatgtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataaaatttgcattc |
128 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||| |||||||||||| ||| ||||| | || |||| |||||||| ||| ||||||| |
|
|
| T |
8633722 |
atattttggaagcaaagaggtatcatgaaatatagggtcaccaggtgaatctccataaatacaattgttaatattagttatgatagaatctgcattc |
8633818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1018 times since January 2019
Visitors: 4109