View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0647_high_7 (Length: 314)
Name: NF0647_high_7
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_high_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 88 - 289
Target Start/End: Complemental strand, 5184806 - 5184605
Alignment:
| Q |
88 |
tcatcagacagacgagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgag |
187 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5184806 |
tcatcagacaggcgagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgag |
5184707 |
T |
|
| Q |
188 |
gccgctggccttgcaggatttacagttctaaattccaggtaattcaagtcaagcattaaagcacttctaattgtggaaactagaatagagttgagtcaag |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5184706 |
gccgctggccttgcaggatttacagttctaaattccaggtaattcaagtcaagcattaaagcacttctaattgtggaaactagaatagagttgagtcaag |
5184607 |
T |
|
| Q |
288 |
tg |
289 |
Q |
| |
|
|| |
|
|
| T |
5184606 |
tg |
5184605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 5394511 - 5394649
Alignment:
| Q |
101 |
gagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgaggccgctggccttg |
200 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| |||||||||||||| |||||||| |||| ||||| |||||||||||||| ||| || ||||||| |
|
|
| T |
5394511 |
gagtttggaagggcgtttgaaagtcttttgaacagaattttaaacgaggtggaattggcgctaaattggaaagaggctcttcgtgtggcagcaggccttg |
5394610 |
T |
|
| Q |
201 |
caggatttacagttctaaattccaggtaattcaagtcaa |
239 |
Q |
| |
|
|||||||| |||| |||||| ||||| ||| ||||||| |
|
|
| T |
5394611 |
caggatttgtagttttaaatttcaggtgatttaagtcaa |
5394649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 5264198 - 5264097
Alignment:
| Q |
88 |
tcatcagacagacgagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgag |
187 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||| |||||||||||| | |||||||||||||||||||| || |
|
|
| T |
5264198 |
tcatcagacaggagagtttggaatatcttttcaaaatcttttgaacaaaatttcaatcgagaaggaattggtgcaaagttggagagaggctcttcgtcag |
5264099 |
T |
|
| Q |
188 |
gc |
189 |
Q |
| |
|
|| |
|
|
| T |
5264098 |
gc |
5264097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 5331726 - 5331630
Alignment:
| Q |
88 |
tcatcagacagacgagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgt |
184 |
Q |
| |
|
||||||||||| || ||||||| | ||||||||| ||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
5331726 |
tcatcagacaggagattttggaaaattatttcaaagttttttgaacaaaatttcaaacgaggagcaattggtgcaaagttggagagaggctcttcgt |
5331630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 5444272 - 5444359
Alignment:
| Q |
102 |
agtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgaggc |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| || ||| ||||| ||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
5444272 |
agtttggaatagcttttcaacgtcttttgaagaaagttccaaaaaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggc |
5444359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 5393282 - 5393365
Alignment:
| Q |
101 |
gagtttggaatagcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgt |
184 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| || |||| ||| |||||| | |||| ||||||||| ||||||||| |
|
|
| T |
5393282 |
gagtttggaatatcttttcaaagttttttgaacaaaacttcaaacaaggtggaattagagctaagttggagagcagctcttcgt |
5393365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 5429841 - 5429905
Alignment:
| Q |
167 |
tggagagaggctcttcgtgaggccgctggccttgcaggatttacagttctaaattccaggtaatt |
231 |
Q |
| |
|
|||||||| || ||||||||||| |||| |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
5429841 |
tggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaatt |
5429905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 5380602 - 5380666
Alignment:
| Q |
167 |
tggagagaggctcttcgtgaggccgctggccttgcaggatttacagttctaaattccaggtaatt |
231 |
Q |
| |
|
|||||||||||||||| || ||| |||| | |||| |||||| ||||||||| ||||||||||| |
|
|
| T |
5380602 |
tggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggtaatt |
5380666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 314
Target Start/End: Complemental strand, 27567157 - 27567127
Alignment:
| Q |
284 |
caagtgttacttgggcattgattttgacggc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27567157 |
caagtgttacttgggcattgattttgacggc |
27567127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 830 times since January 2019
Visitors: 4101