View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_10 (Length: 437)

Name: NF0647_low_10
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_10
NF0647_low_10
[»] chr6 (6 HSPs)
chr6 (28-188)||(17862429-17862588)
chr6 (28-188)||(17873018-17873174)
chr6 (259-368)||(17862659-17862768)
chr6 (285-368)||(17874477-17874560)
chr6 (141-188)||(17875056-17875103)
chr6 (258-290)||(17873243-17873275)
[»] chr5 (2 HSPs)
chr5 (259-361)||(25962167-25962269)
chr5 (259-308)||(12524428-12524477)
[»] chr1 (1 HSPs)
chr1 (287-364)||(2350867-2350944)
[»] chr3 (1 HSPs)
chr3 (262-322)||(47587140-47587200)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 17862429 - 17862588
Alignment:
Q  28 agtcaagaaaagtagtgtggtccaatttaataattaaacgcggtaatagtatggtggggggtgttggttctttgtatcttcatcttggccccacacaaat 127  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||| ||||||| |    
T  17862429 agtcaagaaaagtagtgtggtccactttaataattaaacgcggtaatagtatggtggagggtgt-ggttctttgtatcttcattatggcctcacacaatt 17862527  T
Q  128 gcttccaagaaagtgagacaatttatttatttatttttaaataaatgatattattcattca 188  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17862528 ccttccaagaaagtgagacaattaatttatttatttttaaataaatgatattatttattca 17862588  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 17873018 - 17873174
Alignment:
Q  28 agtcaagaaaagtagtgtggtccaatttaataattaaacgcggtaatagtatggtggggggtgttggttctttgtatcttcatcttggccccacacaaat 127  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||   |    
T  17873018 agtcaagaaaagtagtgtggtccactttaataattaaacgcggtaatagtatggtggggggtg-aggttctttgtatcttcatcttggccccacac---t 17873113  T
Q  128 gcttccaagaaagtgagacaatttatttatttatttttaaataaatgatattattcattca 188  Q
     |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  17873114 ccttccaagaaagtgagacaattaattaattaatttttaaataaatgatattattcattca 17873174  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 259 - 368
Target Start/End: Original strand, 17862659 - 17862768
Alignment:
Q  259 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt 358  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||| |||||    
T  17862659 caacaatcatgtcaataacatatatttacaaagtataaaagcctacaaatttgactatatttatatttatggaatatctatgtctctagatttataacgt 17862758  T
Q  359 tgatgatgtc 368  Q
    |||| |||||    
T  17862759 tgattatgtc 17862768  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 17874477 - 17874560
Alignment:
Q  285 aacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatgatgtc 368  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17874477 aacaaagtataaaagcctacaaatttgactatatttaaatttatagaatatctatgtctccagatttacaacgttgatgatgtc 17874560  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 17875056 - 17875103
Alignment:
Q  141 tgagacaatttatttatttatttttaaataaatgatattattcattca 188  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  17875056 tgagacaattaatttatttatttttaaataaatgatattattcattca 17875103  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 17873243 - 17873275
Alignment:
Q  258 gcaacattcatgtcaatagcatatattaacaaa 290  Q
    |||||||||||||||||||||||||||||||||    
T  17873243 gcaacattcatgtcaatagcatatattaacaaa 17873275  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 25962269 - 25962167
Alignment:
Q  259 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt 358  Q
    |||||||||||| ||||||||| |   |||||||||  | |||||||||| ||||||| || || |||  |||||||| |||||| | ||| ||||||||    
T  25962269 caacattcatgttaatagcataaaacgacaaagtatctatgcctacaaatatgactatattcaagtttccggaatatccatgtctccggatctacaacgt 25962170  T
Q  359 tga 361  Q
    |||    
T  25962169 tga 25962167  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 12524428 - 12524477
Alignment:
Q  259 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaat 308  Q
    |||||||||||| ||||||||| | | |||||||| ||||||||||||||    
T  12524428 caacattcatgttaatagcataaaatgacaaagtacaaaagcctacaaat 12524477  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 2350944 - 2350867
Alignment:
Q  287 caaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatga 364  Q
    ||||||| |||||||||||||| ||||||| || |||| |  |||||| ||||| |||| ||| | ||||||||||||    
T  2350944 caaagtacaaaagcctacaaatatgactatattaaaatctccggaatagctatgccttcggatctgcaacgttgatga 2350867  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 47587140 - 47587200
Alignment:
Q  262 cattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaa 322  Q
    ||||||||| ||||||||| |   ||| ||||||||||||||||||| ||||||| |||||    
T  47587140 cattcatgttaatagcataaaacgacagagtataaaagcctacaaatatgactatttttaa 47587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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