View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_13 (Length: 405)
Name: NF0647_low_13
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 48969056 - 48968914
Alignment:
| Q |
245 |
tcatttattttatttttaacagaccggaaaatcaagacattttgggttcatagaatttgaatctcctgaggtaaaatttgtttttctgattattgtgttg |
344 |
Q |
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| T |
48969056 |
tcatttatttcatgtttaacagactggaaaatcaagacattttgggttcatagaatttgaatctcctgaggtaaaatttgtttttctgattattgtgttg |
48968957 |
T |
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| Q |
345 |
tgattttgatttttggcgtataaactcttgtttgtgatgatgt |
387 |
Q |
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| T |
48968956 |
tgattttgatttttggcgtataaactcttgtttgtgctgatgt |
48968914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 48969167 - 48969084
Alignment:
| Q |
166 |
acacccgtgccttcgagttacctgttttagtaaaatgctcaatttcagcaatatttagttagttaactacctttgatcttcatt |
249 |
Q |
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| T |
48969167 |
acacccgtgccttcgagttacttgttttagtaaaatgctcaatttcagcaatatttagttagttaactacctttgatcgtcatt |
48969084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 48969315 - 48969210
Alignment:
| Q |
4 |
tttttatgcacattgcaaattcttcaaatttgttgttaagtagttctcgtgatacttagttcttcgcttttagcatccctttcttcaaaggtaaagcctt |
103 |
Q |
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| T |
48969315 |
tttttatgcacattgcaaattcttcaaatttgttgt--------------gatacttagttcttcgcttttagcatccctttcttcaaaggtaaagcctt |
48969230 |
T |
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| Q |
104 |
tgtgtaacaggaatttcatc |
123 |
Q |
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| T |
48969229 |
tgtgtaacaggaatttcatc |
48969210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 52835023 - 52835075
Alignment:
| Q |
265 |
agaccggaaaatcaagacattttgggttcatagaatttgaatctcctgaggta |
317 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52835023 |
agactggaaaatcaagacattttggcttcatagaatttgaatctcctgaggta |
52835075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 42677275 - 42677311
Alignment:
| Q |
271 |
gaaaatcaagacattttgggttcatagaatttgaatc |
307 |
Q |
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| T |
42677275 |
gaaaatcaagacatttttggttcatagaatttgaatc |
42677311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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