View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_14 (Length: 389)
Name: NF0647_low_14
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 4194545 - 4194905
Alignment:
| Q |
1 |
cgacccaacaaacacaactgtaacaaaaatcaacctctccaacttcaacctagctggtccattacaaacctcaaccctctgtcgtctcacaaacttaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4194545 |
cgacccaacaaacacaactgtaacaaaaatcaacctctcaaacttcaacctagctggtccattacaaacctcaactctctgtcgtctcacaaacttaacc |
4194644 |
T |
|
| Q |
101 |
acccttatcctaacaaacaacttaataaaccaaacacttcctttagatatttctacttgcacctcccttactcacttagacctctctaacaatctcctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4194645 |
acccttatcctaacaaacaacttaataaaccaaacacttcctttagatatttctacttgcacctcccttactcacttagacctctctaacaatctcctca |
4194744 |
T |
|
| Q |
201 |
ttggtacactcccacatacactaacacacctccctaacctccgttatcttgatttaacagcaaacaacttctcaggctcaatcccaacctcattcggaac |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4194745 |
ttggcacactcccacatacactaacacacctccctaacctccgttatcttgatttaacagcaaacaacttctcaggctcaatcccaacctcattcggaac |
4194844 |
T |
|
| Q |
301 |
atttcccaaactagaagtgctttcactcgtttacaatcttctagaatcttctattccacct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4194845 |
atttcccaaactagaagtgctttcactcgtttacaatcttctagaatcttctattccacct |
4194905 |
T |
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