View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_17 (Length: 337)
Name: NF0647_low_17
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 42875440 - 42875144
Alignment:
| Q |
22 |
ccagtattaaataagaatccattaaccattggtcttgatacatctgtgaatggtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaac |
121 |
Q |
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| T |
42875440 |
ccagtattaaataagaatccattaaccattggtcttgatacatctgtgaatggtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaac |
42875341 |
T |
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| Q |
122 |
atgatcactatttgattgggacttatgatactgttaaggatgtctttgttccagataatggctttgagaataatcaaaatgtgttgagatatgattatgg |
221 |
Q |
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| T |
42875340 |
atgatcactatttgattgggacttatgatactgttaaggatgtctttgttccagataatggctttgagaataatcaaaatgtgttgagatatgattatgg |
42875241 |
T |
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| Q |
222 |
gaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtgttgttgatgatgtc |
318 |
Q |
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| T |
42875240 |
gaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtgttgttgatgatgtc |
42875144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 5903080 - 5903190
Alignment:
| Q |
205 |
ttgagatatgattatgggaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtg |
304 |
Q |
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| T |
5903080 |
ttgagatatgattatggaaaatattatgcatcaaaaactttctttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtg |
5903179 |
T |
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| Q |
305 |
ttgttgatgat |
315 |
Q |
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| T |
5903180 |
ttgctgatgat |
5903190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 5902943 - 5903016
Alignment:
| Q |
74 |
gtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttat |
147 |
Q |
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| T |
5902943 |
gtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttat |
5903016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 27990719 - 27990626
Alignment:
| Q |
208 |
agatatgattatgggaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaa |
301 |
Q |
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| T |
27990719 |
agatatgattatggtaagttttatgcatctaaaacattttacgatgatgcaaaaaagagaagagtcttatggggttggattaatgaatcttcaa |
27990626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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