View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_27 (Length: 309)
Name: NF0647_low_27
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16507181 - 16507412
Alignment:
| Q |
1 |
cttcgacgaagacgatgtgtagcaacatcaccctcctaatggtaataaattataattgtgtttgtttttcgccgggatgaattttggagcatttaccaag |
100 |
Q |
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| T |
16507181 |
cttcgacgaagacgatgtgtagcaacatcaccctcctaatggtaataaattataactgtgtttgtttttcgccgggttgaattttggagcatttaccagg |
16507280 |
T |
|
| Q |
101 |
tccttacccaagagtacctaatccacagtatacctcacattggtcatgtgttggcagataaattcctaccagggacattctaatgtgaacatataccggt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
16507281 |
tccttacccaagagtacctaatccatagtatacctcacattggtcatgcgttggcagatgaattcctacaagggacattctaatgtgaagatataccggt |
16507380 |
T |
|
| Q |
201 |
tgtcgtttgatcgtctagaggttgatgatgtc |
232 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
16507381 |
tgtcgtttgatcatctagaggttgatgatgtc |
16507412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 26391013 - 26391051
Alignment:
| Q |
74 |
gggatgaattttggagcatttaccaagtccttacccaag |
112 |
Q |
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| T |
26391013 |
gggatgaattttggagcatttaccaggtccgtacccaag |
26391051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 42464374 - 42464336
Alignment:
| Q |
74 |
gggatgaattttggagcatttaccaagtccttacccaag |
112 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||| |
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| T |
42464374 |
gggatgaattttggagcatttgccaggtccttacccaag |
42464336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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