View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_28 (Length: 304)

Name: NF0647_low_28
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_28
NF0647_low_28
[»] chr8 (2 HSPs)
chr8 (1-246)||(14759929-14760174)
chr8 (1-246)||(26973460-26973705)
[»] chr4 (2 HSPs)
chr4 (8-249)||(54477303-54477543)
chr4 (44-159)||(3881765-3881880)
[»] chr2 (5 HSPs)
chr2 (7-249)||(35135114-35135356)
chr2 (7-249)||(40328188-40328430)
chr2 (7-249)||(19265426-19265668)
chr2 (47-249)||(3778943-3779145)
chr2 (14-246)||(1487213-1487445)
[»] scaffold0036 (1 HSPs)
scaffold0036 (15-251)||(75926-76161)
[»] chr5 (2 HSPs)
chr5 (8-251)||(7817146-7817389)
chr5 (175-249)||(6640911-6640985)
[»] chr3 (1 HSPs)
chr3 (175-249)||(15473341-15473415)
[»] chr1 (1 HSPs)
chr1 (44-159)||(50451945-50452060)
[»] chr6 (1 HSPs)
chr6 (125-249)||(24990561-24990685)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 14759929 - 14760174
Alignment:
Q  1 aataagactcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaa 100  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14759929 aataaggctcatcatgcactgtgtttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaa 14760028  T
Q  101 ggagacctgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaa 200  Q
    ||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14760029 ggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaaccggttcaaa 14760128  T
Q  201 tcacaaatacggggccccagatatctcacctactctttgctgatga 246  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  14760129 tcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26973460 - 26973705
Alignment:
Q  1 aataagactcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaa 100  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26973460 aataaggctcatcatgcactgtgtttcttcatccaactactccatcttatggaatggaaacaaacttccttacttcaaacccacacgtggccttcgccaa 26973559  T
Q  101 ggagacctgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaa 200  Q
    ||||| | |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26973560 ggagatccgttgtcaccatacctcttcattctttgtatggaaaagctctctattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaa 26973659  T
Q  201 tcacaaatacggggccccagatatctcacctactctttgctgatga 246  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||    
T  26973660 tcacaaatacggggccccaaatatctcacctactatttgccgatga 26973705  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 54477543 - 54477303
Alignment:
Q  8 ctcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacc 107  Q
    ||||||||||| ||| |||| ||||| || ||||  ||| | |||||||||||||| || || |  ||||| || |||| ||| || |||||||| || |    
T  54477543 ctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatc 54477444  T
Q  108 tgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaa 207  Q
      |||||||| || |||||||||||||  |||||||| |||| ||||||||| |||||||  ||||||||||| | |||||||||  | |||||||||||    
T  54477443 ctttgtccccttatctcttcattctttgcatggaaaatctctctattgctatcaattcagtcgtcaatcaagggaattgggaaccaatccaaatcacaaa 54477344  T
Q  208 tacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    || ||||||||| ||||||||||| |||||||| ||||||||    
T  54477343 ta-ggggccccaaatatctcacctcctctttgcagatgatgt 54477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 3881765 - 3881880
Alignment:
Q  44 atcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacctgttgtccccatacctcttcattctttatatggaaa 143  Q
    |||||||||||||| |||||| | ||  | |||||||| |||| |||||| || ||||| || | | | || |  |||||||||||||||| ||||||||    
T  3881765 atcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaa 3881864  T
Q  144 agctctttattgctat 159  Q
    |||| | |||||||||    
T  3881865 agctatctattgctat 3881880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 35135356 - 35135114
Alignment:
Q  7 actcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagac 106  Q
    |||||||||||| ||| || | ||| | | |||||| || ||||||||||||||||| ||| ||   ||||| || || | ||| ||||| ||||| |||    
T  35135356 actcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgac 35135257  T
Q  107 ctgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaa 206  Q
    | |||||| || || || ||||| || | ||||||||| |||| | |||| || ||||| |||||||| ||||| || ||||||||| | ||||||||||    
T  35135256 ccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaaccgatacaaatcacaa 35135157  T
Q  207 atacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    |||||||| || || ||||||||||||||||||| ||||||||    
T  35135156 atacgggggccaaggtatctcacctactctttgcagatgatgt 35135114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 40328188 - 40328430
Alignment:
Q  7 actcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagac 106  Q
    |||||||||||| ||| || | ||| | | |||||| || ||||||||||||||||| ||  ||   ||||| || || | ||| ||||| ||||| |||    
T  40328188 actcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgac 40328287  T
Q  107 ctgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaa 206  Q
    | |||||| || || || ||||| || | ||||||||| |||| | |||| || ||||| |||||||| ||||| || ||||||||| | ||||||||||    
T  40328288 ccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaaccgatacaaatcacaa 40328387  T
Q  207 atacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    |||||||| || || ||||||||||||||||||| ||||||||    
T  40328388 atacgggggccaaggtatctcacctactctttgcagatgatgt 40328430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 19265426 - 19265668
Alignment:
Q  7 actcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagac 106  Q
    |||||||||||| ||| || | ||| | | ||||||| | ||||||||||||||||| ||| ||   ||||| || || | ||| ||||| ||||| |||    
T  19265426 actcatcatgcattgtgttacctcaccaagctactccttgttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgac 19265525  T
Q  107 ctgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaa 206  Q
    | | |||| || || || ||||| || ||||||||||| |||| | |||| || ||||| |||||||||||||| || ||||||||  | ||||||||||    
T  19265526 ccgctgtctccttatcttttcatcctctatatggaaaaactctctgttgcaatcaattccgctgtcaatcaagggagatgggaaccaatacaaatcacaa 19265625  T
Q  207 atacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    ||| |||| || || |||||||  |||||||||| ||||||||    
T  19265626 atatgggggccaaggtatctcatttactctttgcagatgatgt 19265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 3779145 - 3778943
Alignment:
Q  47 ttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacctgttgtccccatacctcttcattctttatatggaaaagc 146  Q
    ||||||||||||||||| ||| ||   ||||| || || | ||| ||||| ||||| |||| | |||| || || || ||||| || | ||||||||| |    
T  3779145 ttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaaac 3779046  T
Q  147 tctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaatacggggccccagatatctcacctactctttgctgatga 246  Q
    ||| | |||| || ||||| |||||||||||||| || ||||||||  | |||||||||||||||||| || || |||||||  |||||||||| |||||    
T  3779045 tctctgttgcaatcaattccgctgtcaatcaagggagatgggaaccaatacaaatcacaaatacgggggccaaggtatctcatttactctttgcagatga 3778946  T
Q  247 tgt 249  Q
    |||    
T  3778945 tgt 3778943  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 1487445 - 1487213
Alignment:
Q  14 atgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacctgttgt 113  Q
    ||||||||| || |||||||||  | ||| || |||||||||||||| ||| | ||| | |||||||| || | | ||||||| ||||| || |   | |    
T  1487445 atgcactgtgttacttcatccactttctctattttatggaatggaaataaattgcctcagttcaaaccgactcatagccttcggcaaggggatccactct 1487346  T
Q  114 ccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaatacggg 213  Q
    | |||||||| ||||||||||  ||||| || |||| ||| ||||| |||   || || ||||||||||||||||||||  |||| ||||| |  || ||    
T  1487345 ctccataccttttcattctttgcatggagaaactctctatggctattaataatgcagtgaatcaaggaagttgggaacctattcagatcaccaccacagg 1487246  T
Q  214 gccccagatatctcacctactctttgctgatga 246  Q
    ||| ||  ||||||| || |||||||| |||||    
T  1487245 gcctcatttatctcatcttctctttgcggatga 1487213  T

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Target: scaffold0036 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 75926 - 76161
Alignment:
Q  15 tgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacctgttgtc 114  Q
    |||| |||||||||||||| | |||||| || ||||||||||||| ||| || |||| |||||| || || | ||| ||  | ||||| |||| ||||||    
T  75926 tgcattgtatttcttcatctagctactcaattttatggaatggaa-caagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtc 76024  T
Q  115 cccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaatacgggg 214  Q
    ||| || || ||||| ||||  ||||||||||||| | ||||||| |||   ||| |||| ||||| |  ||||||  | | ||||||||||||| ||||    
T  76025 cccttatcttttcatcctttgcatggaaaagctctctgttgctatcaatctcgctatcaaccaagggacatgggaagtgatccaaatcacaaataggggg 76124  T
Q  215 ccccagatatctcacctactctttgctgatgatgtcc 251  Q
    |||||| ||||||||||  ||||||| ||||||||||    
T  76125 ccccaggtatctcacctcttctttgcagatgatgtcc 76161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 7817146 - 7817389
Alignment:
Q  8 ctcatcatgcactgtatttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacc 107  Q
    ||||||||||| ||| | || || ||||||||||| || ||||||||||| |||||||| ||||  ||||| || || | ||| ||  | || || ||||    
T  7817146 ctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgacc 7817245  T
Q  108 tgttgtccccatacctcttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaa 207  Q
      || || || ||||| ||||||||||  ||||||||||| | | ||||||| | | | || ||||||||| | || ||||| ||| | |||||||||||    
T  7817246 ctttatctccttaccttttcattctttgcatggaaaagctatatgttgctattagtgccgccgtcaatcaaaggagatgggatccgatccaaatcacaaa 7817345  T
Q  208 tacggggccccagatatctcacctactctttgctgatgatgtcc 251  Q
    || |||||| | ||||||||| ||| | ||||  ||||||||||    
T  7817346 tagggggcctcggatatctcatctattttttgtagatgatgtcc 7817389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 6640985 - 6640911
Alignment:
Q  175 tcaaggaagttgggaaccggttcaaatcacaaatacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    ||||||||||||||||||  | || ||||||||||  ||||| |||||||||||||| ||||||| |||||||||    
T  6640985 tcaaggaagttgggaaccaatccacatcacaaataacgggcctcagatatctcacctgctctttgttgatgatgt 6640911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 15473415 - 15473341
Alignment:
Q  175 tcaaggaagttgggaaccggttcaaatcacaaatacggggccccagatatctcacctactctttgctgatgatgt 249  Q
    |||||| |||||||||||| | || ||||||||    ||||| |||||||||||||| |||||||||||||||||    
T  15473415 tcaagggagttgggaaccgatccatatcacaaacgacgggcctcagatatctcacctcctctttgctgatgatgt 15473341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 50451945 - 50452060
Alignment:
Q  44 atcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagacctgttgtccccatacctcttcattctttatatggaaa 143  Q
    |||||||||||||| |||||| | ||  | |||||||| |||| |||||| || ||||| || | | | || || |||||||||||||||| |||||| |    
T  50451945 atcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggaga 50452044  T
Q  144 agctctttattgctat 159  Q
    |||| | |||||||||    
T  50452045 agctatctattgctat 50452060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 24990685 - 24990561
Alignment:
Q  125 ttcattctttatatggaaaagctctttattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaatacggggccccagatat 224  Q
    ||||||||||  ||||| ||||| | ||| |||||||||   ||||| |  |||||||||||||||||  |||| ||||| |||   || |||||||| |    
T  24990685 ttcattctttgcatggagaagctttctatcgctataaataatgctgtaagccaaggaagttgggaacctattcacatcactaatggaggaccccagatgt 24990586  T
Q  225 ctcacctactctttgctgatgatgt 249  Q
    ||||||| || ||||| ||||||||    
T  24990585 ctcaccttctgtttgcagatgatgt 24990561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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