View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_30 (Length: 299)

Name: NF0647_low_30
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_30
NF0647_low_30
[»] chr3 (5 HSPs)
chr3 (59-299)||(33270310-33270550)
chr3 (61-148)||(39751605-39751692)
chr3 (205-291)||(4844495-4844581)
chr3 (205-291)||(4870191-4870277)
chr3 (258-286)||(12761523-12761551)
[»] chr5 (4 HSPs)
chr5 (59-148)||(25707148-25707237)
chr5 (203-290)||(16773814-16773901)
chr5 (202-291)||(14495786-14495875)
chr5 (205-286)||(16457821-16457902)
[»] chr2 (4 HSPs)
chr2 (68-127)||(34662111-34662170)
chr2 (231-290)||(12994386-12994445)
chr2 (203-277)||(11251107-11251181)
chr2 (203-287)||(12086111-12086195)
[»] scaffold0517 (1 HSPs)
scaffold0517 (205-286)||(7710-7791)
[»] chr7 (3 HSPs)
chr7 (205-286)||(22760874-22760955)
chr7 (205-291)||(47824584-47824670)
chr7 (217-286)||(43215195-43215264)
[»] chr1 (4 HSPs)
chr1 (205-286)||(37400285-37400366)
chr1 (204-286)||(19940855-19940937)
chr1 (205-290)||(34228881-34228965)
chr1 (205-266)||(51281382-51281443)
[»] chr8 (1 HSPs)
chr8 (203-290)||(968369-968456)
[»] chr6 (1 HSPs)
chr6 (202-286)||(12234488-12234572)
[»] chr4 (1 HSPs)
chr4 (203-275)||(7949436-7949508)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 59 - 299
Target Start/End: Original strand, 33270310 - 33270550
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33270310 agctgctgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 33270409  T
Q  159 aattaatcattcaatctatacatttaaaagaaaattaacagtttctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttaga 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  33270410 aattaatcattcaatctatacatttaaaagaaaattaacagttttcaaattgccaccggagagaatgaaacctgagacctttaggtggaacacacttaga 33270509  T
Q  259 ggtcccaagtcaataccaccagaccaactcaaaatccacaa 299  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  33270510 ggtcccaagtcaataccaccagaccaacccaaaatccacaa 33270550  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 39751692 - 39751605
Alignment:
Q  61 ctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    |||||| ||||||||||  ||||| || ||||| |  ||||| |||| |||||||||||||| |||||||||||| || |||||||||    
T  39751692 ctgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg 39751605  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4844495 - 4844581
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | | ||||| ||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4844495 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4844581  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4870191 - 4870277
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | | ||||| ||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4870191 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4870277  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 12761551 - 12761523
Alignment:
Q  258 aggtcccaagtcaataccaccagaccaac 286  Q
    |||||||||||||||||||||||||||||    
T  12761551 aggtcccaagtcaataccaccagaccaac 12761523  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 25707148 - 25707237
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    ||||| || |||||||| ||||| ||||| |||||||||||||| || |||||||||||||| | ||||||||||||||| |||||||||    
T  25707148 agctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg 25707237  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 16773901 - 16773814
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||| || | ||||||||  ||| ||||| ||  ||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  16773901 ctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaa 16773814  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 14495786 - 14495875
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    ||||||||| || |||||||||| |||  ||||| ||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  14495786 tctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 14495875  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 16457902 - 16457821
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  ||||||||| ||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  16457902 aaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaac 16457821  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 34662111 - 34662170
Alignment:
Q  68 agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaa 127  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  34662111 agaccaatcaagatggctgcacctgccataaatcctacaagtgcagcatgtgataaaaaa 34662170  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 12994386 - 12994445
Alignment:
Q  231 tgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    ||||| ||| ||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaa 12994445  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 11251181 - 11251107
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccac 277  Q
    |||||||| |||| |||||||| |||| ||||| ||| ||| |||||||||||  | |||||||| |||||||||    
T  11251181 ctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccac 11251107  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 12086111 - 12086195
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaact 287  Q
    |||||||  |||||||| ||||  |||  |||| ||| ||| |||||||||||  |||||||||| |||||||||||| ||||||    
T  12086111 ctaaattagcaccggagggaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaact 12086195  T

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Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 7710 - 7791
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||| ||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  7710 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 7791  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 22760955 - 22760874
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| || ||| ||||||  ||| ||||| ||| ||| ||||||||||   |||||||||||||||||||||||||||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 47824584 - 47824670
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| ||||||||| |||  |||||||||  || ||| |||||||||||   |||| ||||||||||||||||  ||||||||||    
T  47824584 aaattgacaccggagacaatcgaacatgagactttgaggaggagcacacttcatggtctcaagtcaataccaccacgccaactcaaa 47824670  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 43215264 - 43215195
Alignment:
Q  217 gagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||  ||| ||||| ||| ||| ||||||||||  ||||||||||| ||||||||| ||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaac 43215195  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 37400366 - 37400285
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||| ||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  37400366 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 37400285  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 19940855 - 19940937
Alignment:
Q  204 taaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||| ||||||||||||| |||| ||||| ||| ||| ||||||||||   ||| ||||||  || ||||||||||||||    
T  19940855 taaattggcaccggagagaatcaaacctgagaccttaaggaggagcacactccaaggacccaagctaacaccaccagaccaac 19940937  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 34228965 - 34228881
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||| |||||||||||||  ||| ||||| ||| ||  ||| ||||||  ||||||||||| ||| ||||||||||||||||||    
T  34228965 aaattggcaccggagagaatccaacctgagaccttgaga-ggaacacactccgaggtcccaagccaacaccaccagaccaactcaa 34228881  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 51281443 - 51281382
Alignment:
Q  205 aaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaa 266  Q
    |||||| | ||||||||||| |||| ||||| ||| ||| ||||||||||| ||||||||||    
T  51281443 aaattggcgccggagagaatcaaacctgagaccttgaggaggagcacactttgaggtcccaa 51281382  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 968456 - 968369
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||| || ||||||||||  ||| ||||| ||  ||| ||||||||||   |||||||||| |||||||||||| |||||||||    
T  968456 ctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaa 968369  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 12234488 - 12234572
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||| ||| |||||||||  ||| ||||| ||  ||  ||||||||||   ||||||||||||||||||||||| |||||    
T  12234488 tctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaac 12234572  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 7949436 - 7949508
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacatgagaactttaggtggagcacacttagaggtcccaagtcaatacc 275  Q
    |||||||| |||| ||||||||  ||| ||||| ||| ||| ||||||||||  ||||||||||| |||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

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