View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_34 (Length: 285)

Name: NF0647_low_34
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_34
NF0647_low_34
[»] chr2 (3 HSPs)
chr2 (128-249)||(32343115-32343236)
chr2 (59-129)||(32341857-32341929)
chr2 (66-118)||(32347651-32347705)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-119)||(137026-137083)
[»] chr1 (2 HSPs)
chr1 (64-119)||(27469676-27469733)
chr1 (64-119)||(52839619-52839676)
[»] chr5 (2 HSPs)
chr5 (64-119)||(22397516-22397573)
chr5 (78-119)||(15710293-15710336)
[»] chr4 (2 HSPs)
chr4 (65-119)||(38434688-38434744)
chr4 (67-120)||(1657537-1657592)
[»] chr3 (1 HSPs)
chr3 (62-119)||(53426887-53426946)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 32343115 - 32343236
Alignment:
Q  128 taaaattattgcaagactgattttatgctatgcattttagtgagccatattattttggatagatatattatgaatatatatttgaaattgttaaacatgt 227  Q
    |||||||||  |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343115 taaaattatctcaagactgatataatgctatgcattttattgagccatattattttggatagatatattatgaatatatatttgaaattgttaaacatgt 32343214  T
Q  228 atacttgtctgtgctcctcctc 249  Q
    |||||||| |||| | ||||||    
T  32343215 atacttgtttgtgatgctcctc 32343236  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 32341857 - 32341929
Alignment:
Q  59 catcacacaaagatgatgaacaaaacaacgt--cactaagacgacaaaatctcaaaagaaaaaggtattagta 129  Q
    |||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||| |||||    
T  32341857 catcacacaaagatgatgaacaaaacaacgtcacactaagacgataaaatctcgaaagaaaaaggtagtagta 32341929  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 32347651 - 32347705
Alignment:
Q  66 caaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaa 118  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||| ||||||||    
T  32347651 caaagatgatgaacaaaacaacgtcatactaagacgacaaaacctcgaaagaaaa 32347705  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 137026 - 137083
Alignment:
Q  64 cacaaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaa 119  Q
    |||||||| ||||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  137026 cacaaagacgatgaacaaaacaacgtcgtactaagacgacgaaatcacaaaagaaaaa 137083  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 27469676 - 27469733
Alignment:
Q  64 cacaaagatgatgaacaaaacaacgt--cactaagacgacaaaatctcaaaagaaaaa 119  Q
    |||||||| |||||||||||||||||  |||||||||||| ||||| |||||||||||    
T  27469676 cacaaagacgatgaacaaaacaacgtcgcactaagacgacgaaatcacaaaagaaaaa 27469733  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 52839676 - 52839619
Alignment:
Q  64 cacaaagatgatgaacaaaacaacgt--cactaagacgacaaaatctcaaaagaaaaa 119  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||| | |||||||||    
T  52839676 cacaaagatgacgaacaaaacaacgtcgcactaagacgacaaaatcacgaaagaaaaa 52839619  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 22397516 - 22397573
Alignment:
Q  64 cacaaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaa 119  Q
    |||||||| || |||||||||||||||  ||||||||||| ||||| |||||||||||    
T  22397516 cacaaagacgacgaacaaaacaacgtcgcactaagacgacgaaatcacaaaagaaaaa 22397573  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 15710293 - 15710336
Alignment:
Q  78 acaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaa 119  Q
    |||||||||||||  ||||||||||||||||| |||||||||||    
T  15710293 acaaaacaacgtcgcactaagacgacaaaatcacaaaagaaaaa 15710336  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 38434744 - 38434688
Alignment:
Q  65 acaaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaa 119  Q
    ||||||| || |||||||||||||||  ||||||||||| ||||| |||||||||||    
T  38434744 acaaagacgacgaacaaaacaacgtcgcactaagacgacgaaatcacaaaagaaaaa 38434688  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 1657537 - 1657592
Alignment:
Q  67 aaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaag 120  Q
    |||||||| ||||||||||| |||  ||||||||||| ||||| ||||||||||||    
T  1657537 aaagatgacgaacaaaacaatgtcgcactaagacgacgaaatcacaaaagaaaaag 1657592  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 53426946 - 53426887
Alignment:
Q  62 cacacaaagatgatgaacaaaacaacgtc--actaagacgacaaaatctcaaaagaaaaa 119  Q
    ||||||||||||| |||||| | ||||||  ||||||||||| ||||| |||||||||||    
T  53426946 cacacaaagatgacgaacaacaaaacgtcgcactaagacgacgaaatcacaaaagaaaaa 53426887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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