View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_35 (Length: 284)
Name: NF0647_low_35
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 52193853 - 52194079
Alignment:
| Q |
1 |
gaaaaagaaagaggaatggagcaacaagagtgacttacatgcttgaagaaaatcgtattttaaaatgggaggagaaggagatttgacaggggttctgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
52193853 |
gaaaaagaaagaggaatggagcaacaagagtgacttacatgcttgaagaaaatcgtattttgaaatgggaggagaaggagatttgacatgggttctgaat |
52193952 |
T |
|
| Q |
101 |
tttctgagcattatctcaggaagattctcggttttcgattctaccttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52193953 |
tttctgagcattatctcaggaagattctcggttttcgattctaccttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacat |
52194052 |
T |
|
| Q |
201 |
cgaatttgttgattggggaagaggatg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52194053 |
cgaatttgttgattggggaagaggatg |
52194079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1964871 - 1964753
Alignment:
| Q |
1 |
gaaaaagaaagaggaatggagcaacaagagtgacttacatgcttgaagaaaatcgtattttaaaatgggaggagaaggagatttgacaggggttctgaat |
100 |
Q |
| |
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|||| |||||||||||| ||| | ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||| |||| |
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| T |
1964871 |
gaaatagaaagaggaattgagggagaagtgtgacttacatgcttgaagaaattcgtatttcgaaatgggaggagaaggagatttcataggggttcggaat |
1964772 |
T |
|
| Q |
101 |
tttctgagcattatctcag |
119 |
Q |
| |
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||||||| |||| |||||| |
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| T |
1964771 |
tttctgaacattttctcag |
1964753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 1964729 - 1964695
Alignment:
| Q |
194 |
aagacatcgaatttgttgattggggaagaggatga |
228 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
1964729 |
aagacgtcgaatttgttgattggggaagaggatga |
1964695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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