View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_36 (Length: 283)
Name: NF0647_low_36
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 44034866 - 44034667
Alignment:
| Q |
40 |
ccaagaaaatatagctttagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcct |
139 |
Q |
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| T |
44034866 |
ccaaaaaaatatagctttagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcct |
44034767 |
T |
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| Q |
140 |
atgaaaacagcaggtacagttggtctacgtccaagctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggct |
239 |
Q |
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| T |
44034766 |
atgaaaacagcaggtacagttggtctacgtccaagctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggct |
44034667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 44028339 - 44028294
Alignment:
| Q |
118 |
accacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
163 |
Q |
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| T |
44028339 |
accacctctgaattgttgtcctatgaaaacagcaggtacacttggt |
44028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 39828429 - 39828603
Alignment:
| Q |
57 |
tagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggtac |
156 |
Q |
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||||||| |||||||| ||| |||| || || || |||||||||||||||| || || || |||||||| |||||||||||||| || ||||| || || |
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| T |
39828429 |
tagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaacaccacctacaaattgttgtcctataaacacagctggcac |
39828528 |
T |
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| Q |
157 |
agttggtctacgtccaagctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataac |
231 |
Q |
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| T |
39828529 |
acttggtcgacaaccaagctgaaccaatgcactttctattttctcaccatttaccattttgtcaatctcaataac |
39828603 |
T |
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