View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_39 (Length: 273)

Name: NF0647_low_39
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_39
NF0647_low_39
[»] chr8 (8 HSPs)
chr8 (1-244)||(4181369-4181612)
chr8 (76-134)||(13000371-13000429)
chr8 (79-139)||(30191091-30191151)
chr8 (72-134)||(28468457-28468518)
chr8 (76-134)||(43393719-43393777)
chr8 (76-117)||(1889082-1889123)
chr8 (76-129)||(7918728-7918781)
chr8 (76-121)||(24326109-24326154)
[»] chr7 (5 HSPs)
chr7 (76-135)||(31341199-31341258)
chr7 (147-186)||(23214939-23214978)
chr7 (76-115)||(42839926-42839965)
chr7 (76-134)||(23214920-23214978)
chr7 (85-139)||(31338568-31338622)
[»] chr1 (7 HSPs)
chr1 (76-134)||(26179536-26179594)
chr1 (88-134)||(28467498-28467544)
chr1 (72-139)||(38170633-38170700)
chr1 (76-134)||(4549488-4549546)
chr1 (76-134)||(44422764-44422822)
chr1 (76-132)||(4033964-4034020)
chr1 (147-211)||(26179530-26179594)
[»] chr6 (7 HSPs)
chr6 (83-134)||(32917262-32917313)
chr6 (81-139)||(27595519-27595577)
chr6 (89-139)||(27693399-27693449)
chr6 (83-136)||(1403059-1403112)
chr6 (98-134)||(10616510-10616546)
chr6 (24-68)||(27595533-27595577)
chr6 (84-132)||(31327561-31327609)
[»] scaffold0652 (1 HSPs)
scaffold0652 (72-136)||(3069-3133)
[»] chr5 (7 HSPs)
chr5 (79-131)||(6109551-6109603)
chr5 (83-134)||(11700332-11700383)
chr5 (72-134)||(32172718-32172780)
chr5 (77-117)||(6593381-6593421)
chr5 (94-134)||(12242675-12242715)
chr5 (82-134)||(25079521-25079572)
chr5 (82-134)||(25137490-25137541)
[»] chr3 (7 HSPs)
chr3 (72-132)||(49845483-49845543)
chr3 (147-196)||(22667477-22667526)
chr3 (147-196)||(22724116-22724165)
chr3 (81-134)||(37273199-37273252)
chr3 (82-134)||(1810042-1810094)
chr3 (83-131)||(5292474-5292522)
chr3 (82-134)||(43115121-43115173)
[»] chr2 (5 HSPs)
chr2 (94-134)||(1741997-1742037)
chr2 (147-186)||(45425295-45425334)
chr2 (94-136)||(14316110-14316152)
chr2 (83-139)||(29429711-29429767)
chr2 (22-66)||(40837397-40837441)
[»] chr4 (5 HSPs)
chr4 (76-131)||(18628500-18628555)
chr4 (83-134)||(19429466-19429517)
chr4 (147-186)||(46187856-46187895)
chr4 (76-134)||(7749038-7749096)
chr4 (82-134)||(2996638-2996690)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4181369 - 4181612
Alignment:
Q  1 catataccggcataaatatttacgagactgtttgggggagtatatggaaacaacttatgacatattcagcgtatatactggcataaacacttttgagact 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4181369 catataccggaataaatatttacgagactgtttgggggagtatatggaaacaacttatgacatattcagcatatatactggcataaacacttttgagact 4181468  T
Q  101 atttgggagagtttatggaaaaaacttatgacatattcagcatatatactggcataaacacttatgagactgtttgagagagtttacgggaacagcttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181469 atttgggagagtttatggaaaaaacttatgacatattcagcatgtagactggcataaacacttatgagactgtttgagagagtttacgggaacagcttcc 4181568  T
Q  201 gacatatgcatnnnnnnntttcaccttatttccataagctctac 244  Q
    |||||||||||       ||||||||| ||||||||||||||||    
T  4181569 gacatatgcataaaaaaatttcaccttgtttccataagctctac 4181612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 13000371 - 13000429
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||||||||| ||||| ||||||||||||  ||||||||||| || ||||||||||||    
T  13000371 tactggcataagcacttgtgagactatttgcaagagtttatggtaacaacttatgacat 13000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 30191091 - 30191151
Alignment:
Q  79 tggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    |||||||| ||||| | ||||| |||||||||| ||||||||| |||||||||||| ||||    
T  30191091 tggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttca 30191151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 28468518 - 28468457
Alignment:
Q  72 tatatactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||||||  |||||||||||||||||||||||  ||||| ||||||||| | ||||||||||    
T  28468518 tatatacttacataaacacttttgagactattt-agagagattatggaaacagcttatgacat 28468457  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 43393719 - 43393777
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||| ||| |||||||||||||||| |||||||||| |||| || | ||||||||||||    
T  43393719 tacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttatgacat 43393777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 1889082 - 1889123
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatg 117  Q
    ||||||||||||||||||||||||| ||||||| || |||||    
T  1889082 tactggcataaacacttttgagactgtttgggaaagcttatg 1889123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 7918728 - 7918781
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttat 129  Q
    |||| |||||||||||| ||||||| |||||||||| ||||| ||| |||||||    
T  7918728 tactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 24326154 - 24326109
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaa 121  Q
    ||||||||||| ||||| ||||||| |||||||||| |||||||||    
T  24326154 tactggcataagcacttgtgagactgtttgggagagcttatggaaa 24326109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 31341258 - 31341199
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacata 135  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||    
T  31341258 tacttgcataaacacttttaagactgtttgggagagtttatggaaacaactaatgacata 31341199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 23214978 - 23214939
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagttta 186  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  23214978 tactagcataaacacttatgagactgtttgagagaattta 23214939  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 42839926 - 42839965
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagttta 115  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  42839926 tactagcataagcacttttgagactatttgggagagttta 42839965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 23214978 - 23214920
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||| |||||||||||| ||||||| |||| |||| |||||| ||| ||||||||||||    
T  23214978 tactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 31338622 - 31338568
Alignment:
Q  85 aaacacttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    |||||||  ||||||| |||| ||||||||||||||| ||||| |||||||||||    
T  31338622 aaacactcgtgagactctttgagagagtttatggaaataacttttgacatattca 31338568  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 26179594 - 26179536
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||||||    
T  26179594 tactggcataaacacttgtgagactgttagggagagtttaaggaaacaacttatgacat 26179536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 28467544 - 28467498
Alignment:
Q  88 cacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  28467544 cacttatgagactatttgggagagattatggaaataacttatgacat 28467498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 38170633 - 38170700
Alignment:
Q  72 tatatactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    ||||||||||||| ||||||| |||||||  ||||||||| ||||| ||| | |||||||||| ||||    
T  38170633 tatatactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttca 38170700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 4549488 - 4549546
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||||||||| || || ||||||| |||||||||| |||| |||| ||||||||||||    
T  4549488 tactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacat 4549546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 44422822 - 44422764
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||| |||||||||||||||||| | |||||||| ||||| ||| | ||||||||||    
T  44422822 tactgggataaacacttttgagactgtctgggagagcttatgaaaatagcttatgacat 44422764  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 4033964 - 4034020
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgac 132  Q
    ||||||||||||||||| ||||| | |||| ||||| ||||| ||| ||||||||||    
T  4033964 tactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 26179594 - 26179530
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagtttacgggaacagcttccgacatatgcat 211  Q
    ||||||||||||||||| |||||||||| | ||||||||| || |||| |||  ||||| |||||    
T  26179594 tactggcataaacacttgtgagactgttagggagagtttaaggaaacaacttatgacatgtgcat 26179530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 32917313 - 32917262
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||||| ||||||| |||||||||| ||||||||| ||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacat 32917262  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 27595519 - 27595577
Alignment:
Q  81 gcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    |||||| ||||| ||||||| ||||||||| |||||||||| |||||||||||| ||||    
T  27595519 gcataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttca 27595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 27693399 - 27693449
Alignment:
Q  89 acttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    |||| |||||||||||| |||| |||||||||| |||||||||||| ||||    
T  27693399 acttgtgagactatttgagagaatttatggaaacaacttatgacatgttca 27693449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 1403112 - 1403059
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatat 136  Q
    |||| ||||| ||||||| | ||||||||||||| |||| ||||||||||||||    
T  1403112 ataagcacttgtgagactgtgtgggagagtttatcgaaacaacttatgacatat 1403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 10616510 - 10616546
Alignment:
Q  98 actatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  10616510 actatttgggagagcttatggaaacaacttatgacat 10616546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 27595533 - 27595577
Alignment:
Q  24 gagactgtttgggggagtatatggaaacaacttatgacatattca 68  Q
    ||||||||||||| || | ||||||||||||||||||||| ||||    
T  27595533 gagactgtttgggagaatttatggaaacaacttatgacatgttca 27595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 31327561 - 31327609
Alignment:
Q  84 taaacacttttgagactatttgggagagtttatggaaaaaacttatgac 132  Q
    ||||||||| ||| |||||||| || |||||||||||||| ||||||||    
T  31327561 taaacacttgtgaaactatttgtgaaagtttatggaaaaagcttatgac 31327609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 3133 - 3069
Alignment:
Q  72 tatatactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatat 136  Q
    ||||||||| |||||| |||| || || ||||||| |||||||||||||| |||||| |||||||    
T  3133 tatatactgacataaatacttgtgggattatttggaagagtttatggaaataacttaggacatat 3069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 6109603 - 6109551
Alignment:
Q  79 tggcataaacacttttgagactatttgggagagtttatggaaaaaacttatga 131  Q
    |||||||||||||| ||||| ||||| |||||| |||||||||||| ||||||    
T  6109603 tggcataaacacttgtgagaatattttggagagcttatggaaaaaaattatga 6109551  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 11700332 - 11700383
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||| ||||| ||||||||||  |||||||||||||||| ||||||||||||    
T  11700332 ataagcacttgtgagactattgaggagagtttatggaaacaacttatgacat 11700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 32172780 - 32172718
Alignment:
Q  72 tatatactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||| |||||| ||||| |||||   |||||||||| ||||||||| ||||||||||||    
T  32172780 tatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacat 32172718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 6593421 - 6593381
Alignment:
Q  77 actggcataaacacttttgagactatttgggagagtttatg 117  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  6593421 actggcatgaacacttgtgagactatttgggagaatttatg 6593381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 12242675 - 12242715
Alignment:
Q  94 tgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  12242675 tgagattatttgagagagcttatggaaaaaacttatgacat 12242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 25079521 - 25079572
Alignment:
Q  82 cataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| ||||| ||||||||||||| ||||||||| |||| ||||||||||||    
T  25079521 cataagcacttgtgagactatttgg-agagtttatcgaaacaacttatgacat 25079572  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 25137490 - 25137541
Alignment:
Q  82 cataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| ||||| ||||||||||||| ||||||||| |||| ||||||||||||    
T  25137490 cataagcacttgtgagactatttgg-agagtttatcgaaacaacttatgacat 25137541  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 49845483 - 49845543
Alignment:
Q  72 tatatactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgac 132  Q
    |||||||| | ||||| |||| ||| |||||||||||||| ||||||||| ||||||||||    
T  49845483 tatatactagtataaaaacttatgaaactatttgggagagcttatggaaacaacttatgac 49845543  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 22667526 - 22667477
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagtttacgggaacagc 196  Q
    ||||| ||||| ||||| |||||||||||||||||||||| || ||||||    
T  22667526 tactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22667477  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 22724165 - 22724116
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagtttacgggaacagc 196  Q
    ||||| ||||| ||||| |||||||||||||||||||||| || ||||||    
T  22724165 tactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22724116  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 37273252 - 37273199
Alignment:
Q  81 gcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||| ||||  ||||||| |||||||||| ||||||||| ||||||||||||    
T  37273252 gcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacat 37273199  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 1810094 - 1810042
Alignment:
Q  82 cataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| ||||| |||||||||||| ||||| ||| ||||| ||||||||||||    
T  1810094 cataatcacttgtgagactatttgagagagcttacggaaacaacttatgacat 1810042  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 5292474 - 5292522
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatga 131  Q
    |||| ||||| ||||| ||| |||||||||||| |||||||||||||||    
T  5292474 ataagcacttgtgagattatatgggagagtttaaggaaaaaacttatga 5292522  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 43115173 - 43115121
Alignment:
Q  82 cataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| ||||| ||||| | ||||| |||||||||||||| ||||||||||||    
T  43115173 cataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacat 43115121  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 1741997 - 1742037
Alignment:
Q  94 tgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1741997 tgagactatttgggagagcttatggaaacaacttatgacat 1742037  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 45425334 - 45425295
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagttta 186  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  45425334 tactgggataaacacttatgaaactgtttgagagagttta 45425295  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 14316110 - 14316152
Alignment:
Q  94 tgagactatttgggagagtttatggaaaaaacttatgacatat 136  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||    
T  14316110 tgagactattttggagagcttatggaaacaacttatgacatat 14316152  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 29429711 - 29429767
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatgacatattca 139  Q
    |||| ||||| ||||||| |||||||||| |||| |||| |||| ||||||||||||    
T  29429711 ataagcacttgtgagactgtttgggagagcttatagaaacaactaatgacatattca 29429767  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 40837397 - 40837441
Alignment:
Q  22 acgagactgtttgggggagtatatggaaacaacttatgacatatt 66  Q
    ||||||||||||||| |||| |||| ||||| |||||||||||||    
T  40837397 acgagactgtttgggagagtttatgaaaacatcttatgacatatt 40837441  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 18628500 - 18628555
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatga 131  Q
    ||||| ||||||||||| ||||||| |||||||||| ||||| ||| |||||||||    
T  18628500 tactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 19429466 - 19429517
Alignment:
Q  83 ataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||||  ||||||| |||||||||| ||||||| ||||||||||||||    
T  19429466 ataaacactcgtgagactgtttgggagagcttatggagaaaacttatgacat 19429517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 46187856 - 46187895
Alignment:
Q  147 tactggcataaacacttatgagactgtttgagagagttta 186  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  46187856 tactggcataaacacttatgagactgtttaagagggttta 46187895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 7749038 - 7749096
Alignment:
Q  76 tactggcataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    |||||||||  |||||| ||| |||||||| ||||| ||||||||| ||||||||||||    
T  7749038 tactggcatttacacttatgaaactatttgtgagagcttatggaaacaacttatgacat 7749096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 2996690 - 2996638
Alignment:
Q  82 cataaacacttttgagactatttgggagagtttatggaaaaaacttatgacat 134  Q
    ||||| ||||||||||||| |||| ||||| ||||| ||| ||||||||||||    
T  2996690 cataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacat 2996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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