View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_4 (Length: 554)
Name: NF0647_low_4
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 23 - 533
Target Start/End: Original strand, 55329162 - 55329678
Alignment:
| Q |
23 |
atcatcgattccgataagactttgatttgtatgcgaagtgctatcaatttcatctcttcccttgctcgccataatggtcgattcatgttcatcaacacca |
122 |
Q |
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| T |
55329162 |
atcatcgattccgataagactttgatttgtatgcgaagtgctatcaatttcatctcttcccttgctcgccataatggtcgattcatgttcatcaacacca |
55329261 |
T |
|
| Q |
123 |
atcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgctacagtccctcttccaattctctctggcgtactggtggatttctcaccaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329262 |
atcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgctacagtccctcttccaattctctctggcgtactggtggatttctcaccaa |
55329361 |
T |
|
| Q |
223 |
cagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcggtcccactcagccttccgattgcatcgtcattgtcgataccgagagcaag |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
55329362 |
cagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcggtcccactcagcctcccgattgcatcgtcattgtcgatactgagagcaag |
55329461 |
T |
|
| Q |
323 |
tcttctgttattgacgaggctttcaaacttcacattccaattgtcgctcttgttgattctgctatgcctctccatactttcagccgcattgcttatccca |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329462 |
tcttctgttattgacgaggctttcaaacttcacattccaattgtcgctcttgttgattctgctatgcctctccatactttcagccgcattgcttatccca |
55329561 |
T |
|
| Q |
423 |
ttcccgttaacccctctgttcaatttgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaag------aagaacaacaactctaatat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
55329562 |
ttcccgttaacccctctgttcaatttgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaagaacaacaacaacaacaactctaatat |
55329661 |
T |
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| Q |
517 |
caaacttcttgatgatg |
533 |
Q |
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||||||||||||||||| |
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| T |
55329662 |
caaacttcttgatgatg |
55329678 |
T |
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