View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_43 (Length: 264)
Name: NF0647_low_43
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 18332582 - 18332674
Alignment:
| Q |
87 |
ccgggtctatcagacccaaatcagtaactaatccaaaatataataatcacctttcttttttgtttgagaatcttttttaaagaatatgatgat |
179 |
Q |
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| T |
18332582 |
ccgggtctatcagaccaaaatcagtaactaatccaaaatataataatcacctttcttttttgtttgagaatcttttttaaagaatatgatgat |
18332674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18332501 - 18332556
Alignment:
| Q |
1 |
ttatatagcatacggctcggctctactctactataaatatgaaatctatcttccattgcag |
61 |
Q |
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| T |
18332501 |
ttatatagcatacggctcggctct-----actataaatatgaaatctatcttccattgcag |
18332556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 19371099 - 19371050
Alignment:
| Q |
120 |
caaaatataataatcacctttcttttttgtttgagaatcttttttaaaga |
169 |
Q |
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| T |
19371099 |
caaaatataataatcacctttcttttttgtttgagaatcttttttaaaga |
19371050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 19371157 - 19371108
Alignment:
| Q |
120 |
caaaatataataatcacctttcttttttgtttgagaatcttttttaaaga |
169 |
Q |
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| T |
19371157 |
caaaatataataatcacctttcttttttgtttgagaatcttttttaaaga |
19371108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 19371041 - 19370996
Alignment:
| Q |
120 |
caaaatataataatcacctttcttttttgtttgagaatctttttta |
165 |
Q |
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| T |
19371041 |
caaaatataataatcacctttcttttttgtttgagaatctttttta |
19370996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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