View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_49 (Length: 251)
Name: NF0647_low_49
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38244698 - 38244927
Alignment:
| Q |
1 |
atacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244698 |
atacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacaga |
38244797 |
T |
|
| Q |
101 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
38244798 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgttgcttgtgctg |
38244897 |
T |
|
| Q |
201 |
ataagaaacatgcttcaatcaatgatgatg |
230 |
Q |
| |
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||||| |||||||||||||||| |||||| |
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|
| T |
38244898 |
ataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38260998 - 38261227
Alignment:
| Q |
1 |
atacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacaga |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38260998 |
atacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacaga |
38261097 |
T |
|
| Q |
101 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctg |
200 |
Q |
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|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| || |
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| T |
38261098 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtg |
38261197 |
T |
|
| Q |
201 |
ataagaaacatgcttcaatcaatgatgatg |
230 |
Q |
| |
|
||||| |||||||| |||||||||||| |
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|
| T |
38261198 |
ataagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 47285629 - 47285507
Alignment:
| Q |
64 |
atcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgac |
163 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| |||| |
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| T |
47285629 |
atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgat |
47285530 |
T |
|
| Q |
164 |
ggaataactacttttgttcctgt |
186 |
Q |
| |
|
|||| ||||||| ||||| |||| |
|
|
| T |
47285529 |
ggaacaactactcttgtttctgt |
47285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 47307209 - 47307067
Alignment:
| Q |
38 |
tcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgc |
137 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||| |
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|
| T |
47307209 |
tcacaaaaatttgctagtcatg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccag |
47307113 |
T |
|
| Q |
138 |
gtcttcagatt-caaaagctcaatgacggaataactacttttgttcc |
183 |
Q |
| |
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|| || |||| |||||||||||||| |||| ||||||||||||||| |
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|
| T |
47307112 |
atc-tccgattccaaaagctcaatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
66 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
165 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||||||||||| |||| ||| ||||||||||| ||| | |||||||||||||||||| || |
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|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
166 |
aataactacttttgttcctgttgttgctt |
194 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |
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|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 10299735 - 10299610
Alignment:
| Q |
66 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacg |
164 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| |||||||| |||| ||| ||||||||| ||| |||||||||||||||||||| |
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| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
165 |
gaataactacttttgttcctgttgtt |
190 |
Q |
| |
|
||| ||||||||||||||| |||||| |
|
|
| T |
10299635 |
gaacaactacttttgttccggttgtt |
10299610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 2589833 - 2589923
Alignment:
| Q |
101 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
191 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| |||||| |||||||| ||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttg |
2589923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 22222532 - 22222657
Alignment:
| Q |
66 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
165 |
Q |
| |
|
||||||||||||| || |||| | ||||||| |||||||||||||||| |||||||| | ||||||| | ||| ||||||||||| ||||||| || |
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|
| T |
22222532 |
caagtcactacaattttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttgg |
22222631 |
T |
|
| Q |
166 |
aataactacttttgttcctgttgttg |
191 |
Q |
| |
|
|| ||| || |||||| | ||||||| |
|
|
| T |
22222632 |
aacaacaacatttgtttcagttgttg |
22222657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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