View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0647_low_5 (Length: 538)
Name: NF0647_low_5
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_5 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Complemental strand, 18177058 - 18176563
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18177058 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcc |
18176959 |
T |
|
| Q |
121 |
cataaaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattagctattaacctagctatgttaggct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18176958 |
cataaaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattatctattaacctagctatgttaggct |
18176859 |
T |
|
| Q |
221 |
ctttgaccattattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176858 |
ctttgaccattattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacat |
18176759 |
T |
|
| Q |
321 |
gtggattgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176758 |
gtggattgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagat |
18176659 |
T |
|
| Q |
421 |
cgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcatgatgat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18176658 |
cgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcataatgat |
18176563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 51279528 - 51279583
Alignment:
| Q |
311 |
cacatcacatgtggattgggggatttctcatagttggtgctgctgcacatgcagcc |
366 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
51279528 |
cacatcacatctggattgggggatttctcatagtgggtgttgctgcacatgcagcc |
51279583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Original strand, 13217036 - 13217531
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13217036 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattgggctattggtcatggtataagagatattttagaggcc |
13217135 |
T |
|
| Q |
121 |
cataaaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattagctattaacctagctatgttaggct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
13217136 |
cataaaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattatctattaacctagctatgttaagct |
13217235 |
T |
|
| Q |
221 |
ctttgaccattattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217236 |
ctttgaccattattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacat |
13217335 |
T |
|
| Q |
321 |
gtggattgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217336 |
gtggattgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagat |
13217435 |
T |
|
| Q |
421 |
cgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcatgatgat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13217436 |
cgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcataatgat |
13217531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 13219260 - 13219355
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || |||||| |||||||||||| |
|
|
| T |
13219260 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttaga |
13219355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 25 - 516
Target Start/End: Complemental strand, 240669 - 240178
Alignment:
| Q |
25 |
catcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcccata |
124 |
Q |
| |
|
||||||||||||||||| |||||||| || || || |||||||||||||| || || ||||||||||| ||||| | | ||||||||| ||||| || | |
|
|
| T |
240669 |
catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattggccatggacttaaagatattttggaggctcaca |
240570 |
T |
|
| Q |
125 |
aaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattagctattaacctagctatgttaggctcttt |
224 |
Q |
| |
|
| || ||||||||||| ||||| ||||| ||||| ||||| ||| |||||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
240569 |
agggcccatttacaggacaaggccataagggtctttatgaaatcttaacaacgtcatggcatgctcaattatctcttaacctagctatgctaggctctac |
240470 |
T |
|
| Q |
225 |
gaccattattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacatgtgg |
324 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||| |
|
|
| T |
240469 |
aaccattgttgtagctcatcatatgtattctatgcctccctatccatacctagctactgactatggtacacaactttccttgttcacacaccacatgtgg |
240370 |
T |
|
| Q |
325 |
attgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagatcgta |
424 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
240369 |
attggcggatttctaatagtcggtgctgctgcacatgcagcaatttttatggtaagagactatgatccaactactcgatacaacgatctattagatcgcg |
240270 |
T |
|
| Q |
425 |
ttcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcatgatgat |
516 |
Q |
| |
|
| |||||||| ||||||||||||||||| || || |||||||| ||||||||| |||| |||||||||||||| ||||| |||||| ||||| |
|
|
| T |
240269 |
tccttagacaccgcgatgcaatcatatcccaccttaactgggtatgtatatttctaggttttcacagttttggcttgtacattcataatgat |
240178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 238445 - 238390
Alignment:
| Q |
25 |
catcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa |
80 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
238445 |
catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaa |
238390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 14541411 - 14541167
Alignment:
| Q |
24 |
tcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcccat |
123 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
14541411 |
tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatatttcagaggcccat |
14541312 |
T |
|
| Q |
124 |
aaaggtccatttacaggccaaggtcataaaggtctatatgagatcctaacaacgtcatggcatgctcaattagctattaacctagctatgttaggctctt |
223 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14541311 |
aaagatccattcacaggccatggtcataaaggtttatatgagatcctaacaacgtcatgacatgctcaattatctattaacctaactatgttaggctctt |
14541212 |
T |
|
| Q |
224 |
tgaccattattgtagctcaccatatgtatgctatgcctccttatc |
268 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14541211 |
tcaccattattgtagctcaccatatgtatgctatgcctccttatc |
14541167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 207 - 448
Target Start/End: Original strand, 8286281 - 8286528
Alignment:
| Q |
207 |
agctatgttaggctctttgaccattattgt----agctcaccatat--gtatgctatgcctccttatccatacctagctactgactatgggacacaactg |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||| ||||| |||||||||||||| | ||| |
|
|
| T |
8286281 |
agctaggttaggctctttgaccattattgtttgtagctcgtcatatatgtatgatatgcctccttatacatacttagctgctgactatgggacatatctg |
8286380 |
T |
|
| Q |
301 |
tcattgttcacacatcacatgtggattgggggatttctcatagttggtgctgctgcacatgcagccatttttatggtaagagactatgatccaactactc |
400 |
Q |
| |
|
|||||||||||| || | ||| ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
8286381 |
tcattgttcacaaataatatgaggattgggggatttctcatagttggtgttgatgcatatgcagccatttttatggtaagaggctatgattcaactactc |
8286480 |
T |
|
| Q |
401 |
gatacaacgatctattagatcgtattcttagacatcgcgatgcaatca |
448 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
8286481 |
aatacaacgatttactagaccgtgttcttagacatcacgatgtaatca |
8286528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 413 - 516
Target Start/End: Complemental strand, 18044942 - 18044839
Alignment:
| Q |
413 |
tattagatcgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcatga |
512 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18044942 |
tattagatcgtattcttagacatcgtgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggtttgtatattcataa |
18044843 |
T |
|
| Q |
513 |
tgat |
516 |
Q |
| |
|
|||| |
|
|
| T |
18044842 |
tgat |
18044839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 3700034 - 3700135
Alignment:
| Q |
229 |
attattgtagctcaccatatgtatgctatgcctccttatccatacctagctactgactatgggacacaactgtcattgttcacacatcacatgtggattg |
328 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3700034 |
attactgtagctcaccatatttatgatatgtctccttatccatacctagctacggactatgaaacacaactgtcattgttcacacttcacatgtggattg |
3700133 |
T |
|
| Q |
329 |
gg |
330 |
Q |
| |
|
|| |
|
|
| T |
3700134 |
gg |
3700135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 8049468 - 8049549
Alignment:
| Q |
354 |
tgcacatgcagccatttttatggtaagagactatgatccaactactcgatacaacgatctattagatcgtattcttagacatc |
436 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8049468 |
tgcacaagcagccatttttatgctaagagactatgataca-ctactcgatacaacgatctattagatcgtgttcttagacatc |
8049549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 516
Target Start/End: Original strand, 8286529 - 8286573
Alignment:
| Q |
472 |
atatttttaggctttcacagttttggtttgtatattcatgatgat |
516 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
8286529 |
atatttgtaggatttcacagttttggtttgtatattcataatgat |
8286573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 39047942 - 39048070
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttagaggcc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39047942 |
acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaattgggatattggtcatggtataagagatattttagaggcc |
39048041 |
T |
|
| Q |
121 |
cataaaggtccatttacaggccaaggtca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39048042 |
cataaaggtccatttacaggccaaggtca |
39048070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 15664 - 15727
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattgg |
84 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15664 |
acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaattgg |
15727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 26345958 - 26345888
Alignment:
| Q |
428 |
ttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttaggctttcacagttttggt |
498 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
26345958 |
ttagacgtcgcgatacaatcatatcacatatcaactaagtgtgtatatatttaggctttcacaattttggt |
26345888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 29624280 - 29624358
Alignment:
| Q |
404 |
acaacgatctattagatcgtattcttagacatcgcgatgcaatcatatcacatctcaactgggtgtgtatatttttagg |
482 |
Q |
| |
|
|||| |||||||||||| || ||||||||||| ||| ||||||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
29624280 |
acaatgatctattagattgtgttcttagacattgcggtgcaatcctaccacatctaaactgggtttgtatatttttagg |
29624358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
| Q |
21 |
acatcatcatttagctattgcaattctttttctcattgccggtcat |
66 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
39386263 |
acatcatcatttagctattgtaattctttttcgcattgccggtcat |
39386308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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