View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_51 (Length: 250)

Name: NF0647_low_51
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_51
NF0647_low_51
[»] chr6 (3 HSPs)
chr6 (3-220)||(27862431-27862648)
chr6 (9-88)||(13104734-13104813)
chr6 (9-66)||(32895707-32895764)
[»] chr2 (2 HSPs)
chr2 (6-145)||(10977366-10977505)
chr2 (9-66)||(28590318-28590375)
[»] chr1 (4 HSPs)
chr1 (139-220)||(15234696-15234777)
chr1 (1-65)||(17321564-17321628)
chr1 (11-60)||(10395727-10395776)
chr1 (1-61)||(12538790-12538850)
[»] chr7 (2 HSPs)
chr7 (9-71)||(12129192-12129254)
chr7 (11-82)||(10325434-10325505)
[»] chr8 (4 HSPs)
chr8 (9-66)||(26951806-26951863)
chr8 (9-66)||(21276753-21276810)
chr8 (9-66)||(18178811-18178868)
chr8 (6-42)||(33324422-33324458)
[»] scaffold0010 (1 HSPs)
scaffold0010 (9-66)||(255731-255788)
[»] chr4 (2 HSPs)
chr4 (9-66)||(23059707-23059764)
chr4 (12-66)||(9631992-9632046)
[»] chr5 (5 HSPs)
chr5 (9-66)||(24274930-24274987)
chr5 (9-66)||(24387226-24387283)
chr5 (1-66)||(8703840-8703905)
chr5 (9-65)||(24870119-24870175)
chr5 (9-42)||(30304533-30304566)
[»] chr3 (3 HSPs)
chr3 (9-58)||(1017992-1018041)
chr3 (9-66)||(26731237-26731294)
chr3 (9-66)||(47704101-47704158)
[»] scaffold0151 (1 HSPs)
scaffold0151 (13-62)||(21660-21709)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 27862431 - 27862648
Alignment:
Q  3 cccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttccaacaatcctcttctatacttg 102  Q
    |||||||||||| || |||||||||| ||||| ||||||| |||||||||||||||||||||||  | |||||||||||||| ||| ||||||| |||||    
T  27862431 cccagtccaaccatgctaagagaagtggaaaaagatgcatcaatgttgcatttatacctgccaggcgccaacttcttccaacgatcttcttctagacttg 27862530  T
Q  103 tgttgcgcacttgtggtgtggtattgtagttgttattgcgagacctgatgtcttgggctgctctccattcttctagtaagtgagttgcacgttgaaaaac 202  Q
    || ||||||| |||||| ||||||| | ||||||  ||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  27862531 tggtgcgcacatgtggtatggtattttggttgttgctgcgagatctaatgtcttgggctgctctccattcttctagtaaatgagttgcacgttgaaacac 27862630  T
Q  203 ctgcacattagttccatt 220  Q
     |||||||||||| ||||    
T  27862631 atgcacattagtttcatt 27862648  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 13104734 - 13104813
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttccaacaatc 88  Q
    |||||| |||||||||||||  |||||||||||| |||||||||||||||||||| || || |   ||||||||||||||    
T  13104734 ccaaccttgttaagagaagtgaaaaaggatgcatcaatgttgcatttatacctgctaggtgccggtttcttccaacaatc 13104813  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 32895764 - 32895707
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||| |||||||||||||| ||||||||||||| ||| |||||||| || |||||||    
T  32895764 ccaactctgttaagagaagttgaaaaggatgcatcaatattgcatttgtaactgccag 32895707  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 10977505 - 10977366
Alignment:
Q  6 agtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttccaacaatcctcttctatacttgtgt 105  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| || |  ||||||||||| ||| |||||||  ||||||     
T  10977505 agtccaaccctgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgccagatgccggcttcttccaacgatcttcttctagtcttgtgg 10977406  T
Q  106 tgcgcacttgtggtgtggtattgtagttgttattgcgaga 145  Q
    || |||  |||||||||| ||| | |||||| ||||||||    
T  10977405 tgtgcatctgtggtgtgggattttggttgttgttgcgaga 10977366  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 28590318 - 28590375
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  28590318 ccaaccctgttaagagaagtagagaaggatgcatctatgttgcatttatacctgccag 28590375  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 15234777 - 15234696
Alignment:
Q  139 tgcgagacctgatgtcttgggctgctctccattcttctagtaagtgagttgcacgttgaaaaacctgcacattagttccatt 220  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  15234777 tgcgagacctaatgtcttgggctgccctccattcttctagtaagtgagttgcacgttgaaacacatgcacattagtttcatt 15234696  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17321628 - 17321564
Alignment:
Q  1 tgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgcca 65  Q
    ||||||| |||||||| ||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  17321628 tgcccagaccaaccctattaagagaagcggaaaatgatgcatcaatgttgcatttatacctgcca 17321564  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 10395727 - 10395776
Alignment:
Q  11 aaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacc 60  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  10395727 aaccctgttaagagaagtggaaaaggaagcatcaatgttgcatttatacc 10395776  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12538850 - 12538790
Alignment:
Q  1 tgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacct 61  Q
    ||||||| ||||||| |||||||||||  ||||| ||||||| | ||||||||||||||||    
T  12538850 tgcccagaccaacccagttaagagaagaggaaaatgatgcatcagtgttgcatttatacct 12538790  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 12129254 - 12129192
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtc 71  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  12129254 ccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgtc 12129192  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 10325434 - 10325505
Alignment:
Q  11 aaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttcca 82  Q
    |||||| |||||||| || ||||||||||||| |||||| ||||| ||||||||| ||| | | ||||||||    
T  10325434 aaccctattaagagaggtggaaaaggatgcatcaatgttacatttgtacctgccatttgccgatttcttcca 10325505  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 26951806 - 26951863
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26951806 ccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 26951863  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 21276753 - 21276810
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||    
T  21276753 ccaacccagttaagagaagtggaaaaggatgcatcaatattgcatttgtacctgccag 21276810  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18178868 - 18178811
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||||||||||||| |||| ||||||||||||| ||| |||||||| ||||| ||||    
T  18178868 ccaaccctgttaagaaaagtggaaaaggatgcatcaatattgcatttgtaccttccag 18178811  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 33324458 - 33324422
Alignment:
Q  6 agtccaaccctgttaagagaagtagaaaaggatgcat 42  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  33324458 agtccaaccctgttatgagaagtggaaaaggatgcat 33324422  T

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Target: scaffold0010 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 255731 - 255788
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  255731 ccaaccctgttaaaagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 255788  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 23059707 - 23059764
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23059707 ccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 23059764  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 9631992 - 9632046
Alignment:
Q  12 accctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||| |||||||| |||||||||||||||| ||| || ||||||||||| ||||    
T  9631992 accctattaagagaggtagaaaaggatgcatcaatattacatttataccttccag 9632046  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 24274987 - 24274930
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  24274987 ccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24274930  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 24387226 - 24387283
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  24387226 ccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24387283  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8703840 - 8703905
Alignment:
Q  1 tgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    ||||||| |||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||    
T  8703840 tgcccagaccaaccctctgaagagaagcagaaaaagatgcatcaatgttgcatttatacctgccag 8703905  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 24870175 - 24870119
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgcca 65  Q
    |||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  24870175 ccaaccttgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgcca 24870119  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 30304566 - 30304533
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcat 42  Q
    ||||||||||||||||||||||||||||||||||    
T  30304566 ccaaccctgttaagagaagtagaaaaggatgcat 30304533  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 1017992 - 1018041
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttata 58  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  1017992 ccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttata 1018041  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 26731237 - 26731294
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||    
T  26731237 ccaaccctgttaggagaaatagaaaatgatgcatcaatgttgcatttatacctgccag 26731294  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 47704101 - 47704158
Alignment:
Q  9 ccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 66  Q
    |||||| |||||||||||||| | ||||||||||  ||||||||||||||||||||||    
T  47704101 ccaaccatgttaagagaagtaaagaaggatgcatctatgttgcatttatacctgccag 47704158  T

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Target: scaffold0151 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 21660 - 21709
Alignment:
Q  13 ccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctg 62  Q
    |||||||||||  ||| ||||| ||||||| |||||||||||||||||||    
T  21660 ccctgttaagattagtggaaaaagatgcatcaatgttgcatttatacctg 21709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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