View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_52 (Length: 249)
Name: NF0647_low_52
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_52 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 32602856 - 32602626
Alignment:
| Q |
22 |
atcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatattcatcatccttcaatattcataggttcattggaagttcaaat |
121 |
Q |
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| T |
32602856 |
atcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatattcatcatccttcattattcataggttcattggaagttcaaat |
32602757 |
T |
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| Q |
122 |
aattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatcttcagctgctcgattatta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602756 |
aattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatcttcagctgctcgattatta |
32602657 |
T |
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| Q |
222 |
ggaaaca---acaatgtaaccaaaattaaga |
249 |
Q |
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| T |
32602656 |
ggaaacaacaacaatgtaaccaaaattaaga |
32602626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 32592698 - 32592491
Alignment:
| Q |
22 |
atcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatattcatcatccttcaatattcataggttcattggaagttcaaat |
121 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32592698 |
atcatcaaattgcttgcatggtt---cttatatataccactctaaggttatgcaatattcatcatcc----------ataggttcattggaagttcaaat |
32592612 |
T |
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| Q |
122 |
aattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatcttcagctgctcgattatta |
221 |
Q |
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| T |
32592611 |
aattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcatgtgttccatcatcttcagctgctcctttatta |
32592512 |
T |
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| Q |
222 |
ggaaacaacaatgtaaccaaa |
242 |
Q |
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| T |
32592511 |
ggaaacaacaatgtaaccaaa |
32592491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 35125273 - 35125135
Alignment:
| Q |
103 |
gttcattggaagttcaaataattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatc |
202 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||| || | |||||||| ||||||||||||||||| |
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| T |
35125273 |
gttcattggaagtgcaaataattagagcaatggctagggtgatggtgcttgtgttttacatcctagtgctagtgaatatt---gcaagtgttccatcatc |
35125177 |
T |
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| Q |
203 |
ttcagctgctcgattattaggaaacaacaatgtaaccaaaat |
244 |
Q |
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| T |
35125176 |
ttcagctgctcgtttattaggaaccaacgataaaaccaaaat |
35125135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 34581233 - 34581190
Alignment:
| Q |
182 |
tattgcaagtgttccatcatcttcagctgctcgattattaggaa |
225 |
Q |
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|||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
34581233 |
tattgcaagtattccatcatctacagctgctcgtttattaggaa |
34581190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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