View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_54 (Length: 247)
Name: NF0647_low_54
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 52193802 - 52193645
Alignment:
| Q |
77 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
176 |
Q |
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| T |
52193802 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
52193703 |
T |
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| Q |
177 |
atttaggttttatttactttatctcaatatatgtgtgattttgaagatgatgatgatg |
234 |
Q |
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| T |
52193702 |
atttaggttttatttactttatctcaatttatgtgtgattttgaagatgatgatgatg |
52193645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 1964936 - 1965028
Alignment:
| Q |
91 |
gttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatgatttaggtttt |
187 |
Q |
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|||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| || || | |||||||||||||||||||||||||| |
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| T |
1964936 |
gttcaaaacctcaatcgaggattgtttccattgatctaggt----atcgttcatgcaaaaacctctcctacattttcaattgcatgatttaggtttt |
1965028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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