View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0647_low_58 (Length: 223)
Name: NF0647_low_58
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0647_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 49732753 - 49732939
Alignment:
| Q |
19 |
gaaaagatagtgtattcatcaagtccataccctacacaagga---ggaggaggagggtttgagaggggtagaatggtattttttgaaggtgagaaaaggt |
115 |
Q |
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| T |
49732753 |
gaaaagatagtgtattcatcaagtccataccctacacaaggaggaggaggaggagggtttgagaggggtagaatggtattttttgaaggtgagaaaaggt |
49732852 |
T |
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| Q |
116 |
ttgaacttgaggatttgttacgtgcttcagctgaaatgttagggaaaggtggatttggaactgcttataaagctgttcttgatgatg |
202 |
Q |
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| T |
49732853 |
ttgaacttgaggatttgttacgtgcttcagctgaaatgttagggaaaggtggatttggaactgcttataaagctgttcttgatgatg |
49732939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 22837611 - 22837726
Alignment:
| Q |
87 |
aatggtattttttgaaggtgagaaaaggtttgaacttgaggatttgttacgtgcttcagctgaaatgttagggaaaggtggatttggaactgcttataaa |
186 |
Q |
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|||||| ||||| ||||| | ||| |||||||| || ||||||||| | |||||||| || |||||||| ||||| ||| || ||||||| |||||| |
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| T |
22837611 |
aatggtgtttttcgaaggggtgaagaggtttgagctagaggatttgcttcgtgcttcggcggaaatgttggggaagggtaccttaggaactgtctataaa |
22837710 |
T |
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| Q |
187 |
gctgttcttgatgatg |
202 |
Q |
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| T |
22837711 |
gctgttcttgatgatg |
22837726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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