View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0647_low_8 (Length: 456)

Name: NF0647_low_8
Description: NF0647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0647_low_8
NF0647_low_8
[»] chr4 (4 HSPs)
chr4 (19-234)||(6631930-6632145)
chr4 (353-446)||(6635033-6635126)
chr4 (289-392)||(36893471-36893574)
chr4 (289-361)||(6632200-6632272)
[»] chr6 (3 HSPs)
chr6 (289-362)||(32092071-32092144)
chr6 (368-446)||(32092250-32092328)
chr6 (24-116)||(7906576-7906668)
[»] chr7 (2 HSPs)
chr7 (297-360)||(13579873-13579936)
chr7 (295-360)||(13585413-13585478)
[»] chr8 (1 HSPs)
chr8 (298-352)||(35037562-35037616)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 6631930 - 6632145
Alignment:
Q  19 aatagaatggggttagattcttcatcactgattttagcatcccctataacctgctcagcatcattttcaagcaattcaaaagaattttgaagtgtcaagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6631930 aatagaatggggttagattcttcatcactgattttagcatcccctataacctgctcagcatcattttcaagcaattcaaaagaattttgaagtgtcaagt 6632029  T
Q  119 caattgaatttctttgattaggaacctgaacctgaacctgaggtgcattgtgaagagaagaatcatgactctcaggtgctaagggaagagttttcatgca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632030 caattgaatttctttgattaggaacctgaacctgaacctgaggtgcattgtgaagagaagaatcatgactctcaggtgctaagggaagagttttcatgca 6632129  T
Q  219 gtaagattcttgtgat 234  Q
    ||||||||||||||||    
T  6632130 gtaagattcttgtgat 6632145  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 353 - 446
Target Start/End: Original strand, 6635033 - 6635126
Alignment:
Q  353 attaaattgtcacaggtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacacctatg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6635033 attaaattgtcacaggtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacatctatg 6635126  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 36893471 - 36893574
Alignment:
Q  289 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattgtcacaggtatgaaacacacttgctgag 388  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36893471 cctgttatgcagatttgtttagagatatgctttgagccaagtaccaccccttgttgtcacagatattaaattgtcacgggtatgaaacacacttgctgag 36893570  T
Q  389 tagc 392  Q
    ||||    
T  36893571 tagc 36893574  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 6632200 - 6632272
Alignment:
Q  289 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632200 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattg 6632272  T

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Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 32092071 - 32092144
Alignment:
Q  289 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattgt 362  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32092071 cctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgt 32092144  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 32092250 - 32092328
Alignment:
Q  368 gtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacacctatg 446  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  32092250 gtatgaaacacacttgctgagttgctttgattttcaaattgttagtttttgaaaattatgatttctttgtccacttatg 32092328  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 7906576 - 7906668
Alignment:
Q  24 aatggggttagattcttcatcactgattttagcatcccctataacctgctcagcatcattttcaagcaattcaaaagaattttgaagtgtcaa 116  Q
    ||||||| | ||||||||||||||  | ||||||| ||||||||| ||||||| | ||  |||||||| |||||| ||||| |||||||||||    
T  7906576 aatggggatcgattcttcatcacttgtcttagcataccctataacatgctcagtaccaccttcaagcagttcaaaggaattgtgaagtgtcaa 7906668  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 13579873 - 13579936
Alignment:
Q  297 gcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaatt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13579873 gcagatttgtttagagatatgctttgagccaagtaccactccttgtggtcacaggtattaaatt 13579936  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 13585413 - 13585478
Alignment:
Q  295 atgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaatt 360  Q
    |||||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  13585413 atgcagatgtgttttgagttattctttgagccaagtaccactccttgtggtcacaggtatcaaatt 13585478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 35037616 - 35037562
Alignment:
Q  298 cagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggt 352  Q
    ||||||||||||||||||| |||||||||| ||||||| | |||| |||| ||||    
T  35037616 cagatttgtttagagatattctttgagccatgtaccacccgttgtggtcataggt 35037562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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