View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_high_14 (Length: 264)

Name: NF0648_high_14
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_high_14
NF0648_high_14
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-243)||(110770-111012)
[»] chr8 (8 HSPs)
chr8 (1-243)||(30715238-30715480)
chr8 (1-243)||(30723016-30723258)
chr8 (1-197)||(29542308-29542502)
chr8 (5-127)||(23428279-23428401)
chr8 (7-128)||(17908822-17908947)
chr8 (5-136)||(28349377-28349509)
chr8 (7-143)||(8508965-8509096)
chr8 (3-102)||(10737977-10738071)
[»] chr4 (16 HSPs)
chr4 (1-243)||(12660208-12660450)
chr4 (1-243)||(16326736-16326978)
chr4 (1-243)||(1875017-1875259)
chr4 (1-243)||(30674722-30674964)
chr4 (1-243)||(23192982-23193224)
chr4 (1-243)||(25692207-25692433)
chr4 (9-128)||(26996164-26996283)
chr4 (5-127)||(2925206-2925328)
chr4 (3-143)||(53528645-53528785)
chr4 (28-128)||(22747998-22748098)
chr4 (13-128)||(13998971-13999086)
chr4 (26-127)||(12747613-12747714)
chr4 (3-87)||(20193655-20193739)
chr4 (3-87)||(53981106-53981190)
chr4 (1-95)||(21152297-21152391)
chr4 (169-243)||(46532728-46532802)
[»] chr1 (18 HSPs)
chr1 (1-243)||(37359968-37360210)
chr1 (1-243)||(18535992-18536234)
chr1 (1-243)||(11659098-11659340)
chr1 (1-243)||(31093961-31094203)
chr1 (8-128)||(26027727-26027847)
chr1 (4-143)||(3617740-3617879)
chr1 (5-128)||(15551851-15551974)
chr1 (13-128)||(40275243-40275358)
chr1 (3-128)||(27420660-27420785)
chr1 (1-140)||(22577222-22577361)
chr1 (13-143)||(17720764-17720894)
chr1 (5-143)||(11442597-11442734)
chr1 (3-87)||(15715635-15715719)
chr1 (3-87)||(33493987-33494071)
chr1 (61-128)||(29544190-29544257)
chr1 (71-142)||(49626049-49626120)
chr1 (169-228)||(15552025-15552084)
chr1 (79-143)||(146410-146474)
[»] chr7 (16 HSPs)
chr7 (1-243)||(341315-341557)
chr7 (1-243)||(8247005-8247247)
chr7 (1-103)||(26457665-26457767)
chr7 (5-128)||(20123990-20124113)
chr7 (5-127)||(34325318-34325440)
chr7 (13-93)||(22477970-22478050)
chr7 (3-87)||(16647436-16647520)
chr7 (3-87)||(32147491-32147575)
chr7 (5-128)||(7562188-7562311)
chr7 (7-142)||(25674014-25674149)
chr7 (3-87)||(571748-571832)
chr7 (3-87)||(17621797-17621881)
chr7 (3-87)||(25498066-25498150)
chr7 (3-87)||(42207930-42208014)
chr7 (123-190)||(26457521-26457589)
chr7 (3-87)||(42163317-42163401)
[»] chr5 (10 HSPs)
chr5 (1-243)||(21172208-21172450)
chr5 (1-243)||(16672402-16672646)
chr5 (1-243)||(23054393-23054639)
chr5 (1-243)||(35265562-35265805)
chr5 (3-128)||(24224216-24224341)
chr5 (7-142)||(17943615-17943751)
chr5 (13-127)||(18080901-18081015)
chr5 (3-87)||(1532728-1532812)
chr5 (3-87)||(28368044-28368128)
chr5 (3-87)||(30958586-30958670)
[»] chr3 (14 HSPs)
chr3 (1-243)||(15753517-15753759)
chr3 (1-243)||(21882319-21882561)
chr3 (1-243)||(49487746-49487988)
chr3 (2-143)||(20453620-20453766)
chr3 (1-143)||(17032104-17032245)
chr3 (9-128)||(44122892-44123010)
chr3 (3-103)||(10936113-10936213)
chr3 (5-109)||(13925466-13925570)
chr3 (3-87)||(2169713-2169797)
chr3 (3-87)||(9725746-9725830)
chr3 (3-87)||(23343389-23343473)
chr3 (62-143)||(13925576-13925657)
chr3 (3-87)||(13981685-13981769)
chr3 (3-87)||(13989845-13989929)
[»] chr2 (20 HSPs)
chr2 (1-243)||(43288411-43288653)
chr2 (1-243)||(25446081-25446323)
chr2 (1-243)||(19438552-19438798)
chr2 (3-243)||(17320570-17320810)
chr2 (5-143)||(16444391-16444529)
chr2 (5-128)||(19088464-19088586)
chr2 (5-128)||(11311046-11311169)
chr2 (16-143)||(25229807-25229934)
chr2 (1-143)||(21290497-21290639)
chr2 (3-87)||(635295-635379)
chr2 (3-87)||(1524745-1524829)
chr2 (3-87)||(7911025-7911109)
chr2 (3-87)||(14889707-14889791)
chr2 (3-87)||(14897796-14897880)
chr2 (3-87)||(22429359-22429443)
chr2 (3-87)||(22434953-22435037)
chr2 (1-128)||(33032678-33032806)
chr2 (5-143)||(19911268-19911403)
chr2 (3-87)||(43776003-43776087)
chr2 (62-142)||(105356-105436)
[»] chr6 (8 HSPs)
chr6 (16-239)||(6411962-6412184)
chr6 (7-148)||(17271121-17271262)
chr6 (1-243)||(34266988-34267230)
chr6 (13-142)||(6932031-6932162)
chr6 (13-123)||(14461695-14461806)
chr6 (7-128)||(19442148-19442263)
chr6 (3-83)||(14851655-14851735)
chr6 (83-128)||(25394783-25394828)
[»] scaffold0102 (2 HSPs)
scaffold0102 (2-132)||(10949-11078)
scaffold0102 (127-243)||(13047-13163)
[»] scaffold0062 (3 HSPs)
scaffold0062 (13-145)||(18931-19063)
scaffold0062 (13-145)||(29099-29231)
scaffold0062 (13-145)||(39088-39220)
[»] scaffold0020 (2 HSPs)
scaffold0020 (5-128)||(122171-122294)
scaffold0020 (169-229)||(122345-122405)
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-87)||(346735-346819)
[»] scaffold0461 (1 HSPs)
scaffold0461 (3-87)||(13651-13735)
[»] scaffold0066 (1 HSPs)
scaffold0066 (15-128)||(10923-11030)


Alignment Details
Target: scaffold0014 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 110770 - 111012
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110770 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 110869  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  110870 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 110969  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  110970 aatctttgaaaatgaatttgttataatcattttaatgatgatg 111012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30715480 - 30715238
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715480 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 30715381  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  30715380 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 30715281  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30715280 aatctttgaaaatgaatttgttataatcattttaatgatgatg 30715238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30723258 - 30723016
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30723258 agagacatattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 30723159  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||  ||||||||||| ||||||||||||||||||||||||    
T  30723158 atagttgtatgactcacgtgatagtgacgagtatatgaaactctccgatagagttaattttcgtgagatattgaataaatgacatcatatgtccattcta 30723059  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||| |||||||||||||||||||||||||| ||||||||||||    
T  30723058 aatatttgaaaatgaatttgttataatcatcttaatgatgatg 30723016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29542308 - 29542502
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||| ||||| ||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||| |||||||    
T  29542308 agagatatattcacctgaaatgaattcaagaactttttcttacttgattaagtttagtatcacatgaaagactcaatttatatgaaaaatgtattgcaat 29542407  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccatt 197  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||  || | | |||||||||  |||||||||||||||||||||||||||||||||    
T  29542408 atagttgtatgacccacatgatagtgatgagtatatgaaactct--gaaagagttaattttcgtgagatattgaagaaatgacatcatatgtccatt 29542502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 23428279 - 23428401
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| |||| |||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| | |||||||     
T  23428279 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaaggctcaacttatacgaaatatgtgctacaatatat 23428378  T
Q  105 ttgtatgactcacgtgatagtga 127  Q
    ||||||| ||||| |||||||||    
T  23428379 ttgtatggctcacttgatagtga 23428401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 17908822 - 17908947
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagttta----gtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||| ||||||||| ||||||||||||||||| | |||||||||||| |    |||  |||| ||| |||||| |||||||||||||||||| |||| |    
T  17908822 atattcacctgaagtgaattcaagaactttttcatacttgattaagttcagtacgtagcacataaaatgctcaaattatatgaaagatgtgttacaattt 17908921  T
Q  103 agttgtatgactcacgtgatagtgat 128  Q
    | || |||| ||||| ||||||||||    
T  17908922 atttttatggctcacttgatagtgat 17908947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 28349509 - 28349377
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatg-aaaggctcaatttatatgaaagatgtgttgcaatata 103  Q
    ||||||| ||| ||||| ||||||||||||||||| | |||||||||||| ||||  ||||| ||| ||| || |||||||||| ||||| | |||||||    
T  28349509 acatattcacccgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaatgcttaaattatatgaaatatgtgctacaatata 28349410  T
Q  104 gttgtatgactcacgtgatagtgatgagtatat 136  Q
     |||||||  |||| ||| |||||||| |||||    
T  28349409 tttgtatggatcacttgacagtgatgattatat 28349377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 8508965 - 8509096
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagtt 106  Q
    ||||| ||||||||  ||||||||||||||||| | ||||| |||||||||||  ||||||||| ||||  ||||| |||||||||||| |||| || ||    
T  8508965 atattcacctgaagcgaattcaagaactttttcatacttgaataagtttagtagcacatgaaagactcacattata-gaaagatgtgttacaatttattt 8509063  T
Q  107 gtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    |  |||||    |||||||||||| ||||||||||||    
T  8509064 ggctgact----tgatagtgatgattatatgaaactc 8509096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 10737977 - 10738071
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| || | |||| ||||| ||||||||||     |||||||||||  |||  ||||||||||||||| |||||||||||||||| | ||||||    
T  10737977 agacatattcacttaaagtgaattcgagaacttttt-----ttgattaagttctgtagcacatgaaaggctcaaattatatgaaagatgtgctacaatat 10738071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12660450 - 12660208
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12660450 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 12660351  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12660350 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 12660251  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12660250 aatctttgaaaatgaatttgttataatcattttaatgatgatg 12660208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16326978 - 16326736
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16326978 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 16326879  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  16326878 atagctgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 16326779  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16326778 aatctttgaaaatgaatttgttataatcattttaatgatgatg 16326736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1875259 - 1875017
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875259 agagacatatttacctgaagttaattcaagaaccttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 1875160  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  1875159 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaatttttgtgagatattgaagaaatgacatcatatgtccattcta 1875060  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1875059 aatctttgaaaatgaatttgttataatcattttaatgatgatg 1875017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30674964 - 30674722
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30674964 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 30674865  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  30674864 atagtcgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtctattcta 30674765  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  30674764 aatctttgaaaatgaatttgttataatcattttaatgacgatg 30674722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23192982 - 23193224
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23192982 agagacatatttacctgaagtgaattcaagaactttttcttgattgataaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 23193081  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| ||    
T  23193082 atagttgtatgactcacgtgataatgatgagtatatgaaactctcagataaaattaattttagtgagatattgaagaaatgacatcatatgtccatttta 23193181  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  23193182 aatctttgaaaataaatttgttataatcattttaatgatgatg 23193224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25692433 - 25692207
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25692433 agagacatattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 25692334  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||| |||||||||||                |||||||  ||||||||||||||||||||||||| ||||||||||    
T  25692333 atagttgtatgactcacgtgatagtgacgagtatatgaa----------------aattttcgtgagatattgaagaaatgacatcatacgtccattcta 25692250  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  25692249 aatatttgaaaatgaatttgttataatcattttaatgatgatg 25692207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 26996164 - 26996283
Alignment:
Q  9 atttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgt 108  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||| ||||| |||||||||||||||||| |||| || || |    
T  26996164 atttacctgaagtgaattcaagaactttttcatgcttgattaagttcagtagcacatgaaagactcaaattatatgaaagatgtgttacaatttatttat 26996263  T
Q  109 atgactcacgtgatagtgat 128  Q
    ||||||||| ||||||||||    
T  26996264 atgactcacttgatagtgat 26996283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 2925328 - 2925206
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| |||| |||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||| ||| ||||| |||||||||| | |||||||     
T  2925328 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaaggcccaaattatacgaaagatgtgctacaatatat 2925229  T
Q  105 ttgtatgactcacgtgatagtga 127  Q
    ||||||||||||| |||||||||    
T  2925228 ttgtatgactcacttgatagtga 2925206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 53528645 - 53528785
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| || |||||| ||||||| ||||||||| | |||||||||||| |  |  | ||||||||||||| |||||||||||||||| | ||||||    
T  53528645 agacatattcacttgaagtgaattcaataactttttcatacttgattaagttcatcagcatatgaaaggctcaaattatatgaaagatgtgctacaatat 53528744  T
Q  103 agttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    | ||| ||| ||||| |||||||| ||| ||||||||||||    
T  53528745 atttgcatggctcacttgatagtggtgattatatgaaactc 53528785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 22747998 - 22748098
Alignment:
Q  28 aagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtga 127  Q
    |||||||||||| | |||||||||||| ||||  |||| |||| ||||| |||||||||||||||| | ||||||| ||||||||||||| |||||||||    
T  22747998 aagaactttttcatacttgattaagttcagtaacacataaaagactcaaattatatgaaagatgtgctacaatatatttgtatgactcacttgatagtga 22748097  T
Q  128 t 128  Q
    |    
T  22748098 t 22748098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 13998971 - 13999086
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| ||||||||||||||||| | ||||||||| || ||||  ||||||||| ||||| ||||||||||||||||   ||||||| || ||||     
T  13998971 acctgaagtaaattcaagaactttttcatacttgattaaattcagtagcacatgaaagactcaaattatatgaaagatgtgcaacaatatatttttatgt 13999070  T
Q  113 ctcacgtgatagtgat 128  Q
    ||||| ||||||||||    
T  13999071 ctcacttgatagtgat 13999086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 12747714 - 12747613
Alignment:
Q  26 tcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagt 125  Q
    |||||||||||||| | |||||||||||| ||||  ||||||||| ||||| ||||| |||||||||| | ||||||| ||||||| ||||| |||||||    
T  12747714 tcaagaactttttcatacttgattaagttaagtagcacatgaaagactcaaattatacgaaagatgtgctacaatatatttgtatggctcacttgatagt 12747615  T
Q  126 ga 127  Q
    ||    
T  12747614 ga 12747613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 20193739 - 20193655
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  20193739 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 20193655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 53981106 - 53981190
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  53981106 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 53981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 21152297 - 21152391
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgtt 95  Q
    ||||||||||| || ||| || ||||||||||||||| | |  || ||||||||||||| ||| ||||||  ||||||||||  |||||| ||||    
T  21152297 agagacatattcacgtgatgtgaattcaagaacttttccatatttaattaagtttagtagtacttgaaagattcaatttataaaaaagatttgtt 21152391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 46532728 - 46532802
Alignment:
Q  169 tattgaagaaatgacatcatatgtccattctaaatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||||||||| |||| ||||  |||||||| ||||  |||  |||||||||||||||||||| ||| |||||||||    
T  46532728 tattgaagagatgatatcagttgtccattttaaagatttataaatgaatttgttataatcaattttatgatgatg 46532802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37360210 - 37359968
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37360210 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 37360111  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  37360110 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 37360011  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37360010 aatctttgaaaatgaatttgttataatcattttaatgatgatg 37359968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18536234 - 18535992
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18536234 agagacatatttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 18536135  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18536134 atagttgtatgactcacatgatagtgatgagtatatgaaactcttcgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 18536035  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18536034 aatctttgaaaatgaatttgttataatcattttaatgatgatg 18535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11659098 - 11659340
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11659098 agagacatatttacctgaagtaaattcaaaaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 11659197  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11659198 atagttgtatgaatcacgtgatagtgatgaatatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 11659297  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  11659298 aatctttgaaaatgaatttgttataaacattttaatgatgatg 11659340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31094203 - 31093961
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31094203 agagacaaattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 31094104  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |  ||||||||||||||||||||||||||||||||||||    
T  31094103 atagttgtatgactcacgtgatagtgacgagtatatgaaactctccgatagagttaatttccgtgagatattgaagaaatgacatcatatgtccattcta 31094004  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  31094003 aatatttgaaaatgaatttgttataatcattttaatgatgatg 31093961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 26027727 - 26027847
Alignment:
Q  8 tatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttg 107  Q
    |||| ||||||||| ||||||||||||||||| | |||||||||||| | ||  ||||||||||||||| |||||||||||||||| | ||||||| |||    
T  26027727 tattcacctgaagtgaattcaagaactttttcatacttgattaagttcaatagcacatgaaaggctcaaattatatgaaagatgtgctacaatatatttg 26027826  T
Q  108 tatgactcacgtgatagtgat 128  Q
    |||||||||| ||||||||||    
T  26027827 tatgactcacttgatagtgat 26027847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 3617879 - 3617740
Alignment:
Q  4 gacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatata 103  Q
    |||||||| ||||||||| ||||||| ||||||||| | || ||||||||| ||||  ||||||||||||||| |||||||| ||||||| | |||||||    
T  3617879 gacatattcacctgaagtgaattcaataactttttcatactggattaagttgagtagcacatgaaaggctcaaattatatgatagatgtgctacaatata 3617780  T
Q  104 gttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
     ||||||| ||||| |||| ||| ||| ||||||||||||    
T  3617779 tttgtatggctcacttgattgtggtgattatatgaaactc 3617740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 15551851 - 15551974
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| |||| |||  ||||||||||||||||||| |||||||||||| || |  |||| |||||||||| |||||||||||||||||| |||||||     
T  15551851 acatattcacctaaagggaattcaagaactttttcttacttgattaagttcaggagcacattaaaggctcaaattatatgaaagatgtgttacaatatat 15551950  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    ||||||| ||||| ||||||||||    
T  15551951 ttgtatggctcacttgatagtgat 15551974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 40275358 - 40275243
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||||||||||| ||| |||| || || |||||    
T  40275358 acctgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaagatgagttacaatttatttatatga 40275259  T
Q  113 ctcacgtgatagtgat 128  Q
    ||||| ||||||||||    
T  40275258 ctcacttgatagtgat 40275243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 27420785 - 27420660
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| ||||||||| |||||||  |||||||| |  ||||||||||| | ||  ||||||||| ||||| |||||||||||||||||| |||| |    
T  27420785 agacatattcacctgaagtgaattcaaacactttttcatatttgattaagttcaatagcacatgaaagactcaaattatatgaaagatgtgttacaattt 27420686  T
Q  103 agttgtatgactcacgtgatagtgat 128  Q
    | || |||||||||| ||||| ||||    
T  27420685 atttatatgactcacttgataatgat 27420660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 22577361 - 22577222
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| | ||||||| ||||||||||||||||| | ||||| |||||| |||   ||||||||| ||||| || |||||||||||||   ||||    
T  22577361 agagacatattcaactgaagtgaattcaagaactttttcatacttgaataagttcagtggcacatgaaagactcaaattgtatgaaagatgtgcaacaat 22577262  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaa 140  Q
     || ||||||| ||||  |||||||||||  |||||||||    
T  22577261 ttatttgtatggctcaattgatagtgatggttatatgaaa 22577222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 17720764 - 17720894
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| |||||||||| |||||| | |||| |||| || |||   |||||||| |||||| |||||||||||||||| | |||| || ||||| ||    
T  17720764 acctgaagtgaattcaagaattttttcatacttggttaatttcagtggcacatgaaatgctcaaattatatgaaagatgtgctacaatttatttgtacga 17720863  T
Q  113 ctcacgtgatagtgatgagtatatgaaactc 143  Q
    ||||| ||||| || ||| ||||||||||||    
T  17720864 ctcacttgatattggtgattatatgaaactc 17720894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 11442734 - 11442597
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaa-gtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatata 103  Q
    ||||||| || |||||| ||||||||||||||||| | ||  || || ||| ||||  ||||||||| ||||| |||||| ||||||||| |  ||||||    
T  11442734 acatattcacgtgaagtgaattcaagaactttttcatact--atcaaagttcagtagcacatgaaagactcaaattatataaaagatgtgctaaaatata 11442637  T
Q  104 gttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
     ||||||||||||| |||||||||||| ||||| ||||||    
T  11442636 tttgtatgactcacttgatagtgatgattatattaaactc 11442597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 15715635 - 15715719
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  15715635 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 15715719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 33494071 - 33493987
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  33494071 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 33493987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 29544190 - 29544257
Alignment:
Q  61 tacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgat 128  Q
    ||||||||| |||||| |||||||||||||||||| |||| |  || |||||||||| ||||||||||    
T  29544190 tacatgaaatgctcaaattatatgaaagatgtgttacaatttgtttatatgactcacttgatagtgat 29544257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 49626120 - 49626049
Alignment:
Q  71 gctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgatgagtatatgaaact 142  Q
    ||||||||||||||||| ||||||| |||| || || |||  |||||||||||||||||| ||| |||||||    
T  49626120 gctcaatttatatgaaatatgtgttacaatgtatttatattgctcacgtgatagtgatgattatctgaaact 49626049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 15552025 - 15552084
Alignment:
Q  169 tattgaagaaatgacatcatatgtccattctaaatctttgaaaatgaatttgttataatc 228  Q
    ||||||| | |||||||||| |||||||| |||   ||||||||||||||||||||||||    
T  15552025 tattgaaaagatgacatcatttgtccattttaaggatttgaaaatgaatttgttataatc 15552084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 146474 - 146410
Alignment:
Q  79 tatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    |||||||||||| || |  |||||| |||||||||| || |||||||||||| ||||| ||||||    
T  146474 tatatgaaagatttgctataatatatttgtatgacttacttgatagtgatgattatattaaactc 146410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 341557 - 341315
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341557 agagacatatttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 341458  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  341457 atagttgtatgactcacgtgatagtaatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 341358  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  341357 aatctttgaaaatgaatttgttataatcattttaatgatgatg 341315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8247005 - 8247247
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8247005 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaagactcaatttatatgaaagatgtgttgcaat 8247104  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8247105 atagttgtatgactcacatgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 8247204  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8247205 aatctttgaaaatgaatttgttataatcattttaatgatgatg 8247247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26457767 - 26457665
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| ||||||||| | |||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  26457767 agagacatattcacctgaagtgagttcaaggaatttttcttgcttgattaagtttagtatcacatgaaagactcaatttatatgaaaaatgtgttgcaat 26457668  T
Q  101 ata 103  Q
    |||    
T  26457667 ata 26457665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 20123990 - 20124113
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||  ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||||||||||||||| |||||||     
T  20123990 acatattcacctgaagggaattcaagaactttttcgtacttgattaagttcagtagcacatgaaaggctcaaattatatgaaagatgtgttacaatatat 20124089  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    || |||| ||||| ||||||||||    
T  20124090 ttatatggctcacttgatagtgat 20124113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 34325318 - 34325440
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| |||| |||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||| |||||||||| | |||||||     
T  34325318 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaaggctcaaattatacgaaagatgtgctacaatatat 34325417  T
Q  105 ttgtatgactcacgtgatagtga 127  Q
    ||||||| ||||| |||||||||    
T  34325418 ttgtatggctcacttgatagtga 34325440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 22478050 - 22477970
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtg 93  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||||||||||||||    
T  22478050 acctgaagtgaattcaagaactttttcatacttgattaagtttagtagaacatgaaagactcaaattatatgaaagatgtg 22477970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 16647436 - 16647520
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  16647436 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 16647520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 32147491 - 32147575
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  32147491 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 32147575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 7562188 - 7562311
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| | ||||||| |||||||||| |||||| | |||||||||||| ||||  |||| |||| ||||| |||||||||||||||| | |||||||     
T  7562188 acatattcaactgaagtgaattcaagaattttttcatacttgattaagttcagtagcacataaaagactcaaattatatgaaagatgtgctacaatatat 7562287  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    || |||  |||||  |||||||||    
T  7562288 ttatattgctcactggatagtgat 7562311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 25674149 - 25674014
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagtt 106  Q
    ||||| || |||||| |||| || ||||||||| |||| |||||| |||||||  ||||||||| || |||||||||||||||| ||||  || ||| ||    
T  25674149 atattcacttgaagtaaatttaaaaactttttcgtgctggattaaatttagtaccacatgaaagacttaatttatatgaaagatatgttagaacatattt 25674050  T
Q  107 gtatgactcacgtgatagtgatgagtatatgaaact 142  Q
    |||||| | |  |||| ||||||| |||||||||||    
T  25674049 gtatgatttatttgatggtgatgattatatgaaact 25674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 571832 - 571748
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  571832 agacatattcaccagaagtgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 571748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 17621797 - 17621881
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  17621797 agacatattcaccagaagtgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 17621881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 25498066 - 25498150
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| |  ||||||||||| ||||  ||||||||||||||| ||||||||||    
T  25498066 agacatattcaccagaagtgaatccaagaactttttcataattgattaagttcagtagcacatgaaaggctcaaattatatgaaa 25498150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 42207930 - 42208014
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  42207930 agacatattcaccagaagtgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 42208014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 26457589 - 26457521
Alignment:
Q  123 agtgatgagtatatgaaactctccgataaaa-ttaattttctagagatattgaagaaatgacatcatat 190  Q
    ||||||||||||||| ||||||| || || | |||||||||  ||||||||||||||||||||||||||    
T  26457589 agtgatgagtatatggaactctctgaaaagagttaattttcgtgagatattgaagaaatgacatcatat 26457521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 42163401 - 42163317
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||||||| ||||| ||| ||||||||||||| |  ||||||||||| || |  ||||||||||||||  ||||||||||    
T  42163401 agacatatttaccagaagtgaatccaagaactttttcatagttgattaagttcaggagcacatgaaaggctcacattatatgaaa 42163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 21172450 - 21172208
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21172450 agagacatatttacctgaagttaattcaataactttttcttgcttgattaagtttagtattacatgaaaggctaaatttatatgaaagatgtgttgcaat 21172351  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21172350 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 21172251  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21172250 aatctttgaaaatgaatttgttataatcattttaatgatgatg 21172208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16672402 - 16672646
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16672402 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 16672501  T
Q  101 atagttgtatgactcacgtgatagtgatgag--tatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattc 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16672502 atagttgtatgactcacgtgatagtgatgagtatatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattc 16672601  T
Q  199 taaatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16672602 taaatctttgaaaatgaatttgttataatcattttaatgatgatg 16672646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23054639 - 23054393
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23054639 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 23054540  T
Q  101 atagttgtatg----actcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccat 196  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  23054539 atagttgtatgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccat 23054440  T
Q  197 tctaaatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23054439 tctaaatctttgaaaatgaatttgttataatcattttaatgatgatg 23054393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 35265805 - 35265562
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35265805 agagacatatttacctgaagttaattcaagaaccttttcttgcttgattaagtttagtactacatgaaaggctcaatttatatgaaagatgtgttgcaat 35265706  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  35265705 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 35265606  T
Q  201 aatctttgaaaatgaatttgttataatca-ttttaatgatgatg 243  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  35265605 aatctttgaaaatgaatttgttataatcatttttaatgatgatg 35265562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 24224341 - 24224216
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| ||||||||| |||| |||||||||||| | |||||||||||| | ||  |||||||| ||| || |||||||||||||||||| |||| |    
T  24224341 agacatattcacctgaagtgaatttaagaactttttcatacttgattaagttcattagcacatgaaatgcttaaattatatgaaagatgtgttacaattt 24224242  T
Q  103 agttgtatgactcacgtgatagtgat 128  Q
    | || |||||||||| | ||||||||    
T  24224241 atttatatgactcacttaatagtgat 24224216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 17943615 - 17943751
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagtt 106  Q
    ||||| ||||||||| ||||||| ||||||||| |  |||||||||||  |||  |||||||| |||||| |||||||||||||||||| |||| || ||    
T  17943615 atattcacctgaagtgaattcaaaaactttttcatagttgattaagttcggtagcacatgaaatgctcaaattatatgaaagatgtgttacaatttattt 17943714  T
Q  107 gtatgactcacgtgatag-tgatgagtatatgaaact 142  Q
    ||||| ||||| |||||| |||||  |||||||||||    
T  17943715 gtatggctcacttgatagttgatggttatatgaaact 17943751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 18081015 - 18080901
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    |||| |||| ||||||| ||||||||| | |||||||||||| || |  |||||||| |||||| ||||| ||||||| || | ||||||| |||||||     
T  18081015 acctcaagtgaattcaaaaactttttcatacttgattaagttaagcagcacatgaaatgctcaaattatacgaaagatatgctacaatatatttgtatgg 18080916  T
Q  113 ctcacgtgatagtga 127  Q
    ||||| |||||||||    
T  18080915 ctcacttgatagtga 18080901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 1532812 - 1532728
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  | ||||||||||||| ||||||||||    
T  1532812 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcatatgaaaggctcaaattatatgaaa 1532728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 28368128 - 28368044
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||  ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  28368128 agacatattcaccagaagcgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 28368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 30958670 - 30958586
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| |||  |||| ||| ||||||||||||| | |||||||||||| ||||  |||||||||||| || ||||||||||    
T  30958670 agacatattcaccataagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggcttaaattatatgaaa 30958586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15753759 - 15753517
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15753759 agagacatatttacctgaagttaattcaagaactttttcttgcatgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 15753660  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  15753659 ataattgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 15753560  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  15753559 aatctttgaaaatgaatttgttataatcattttaatcatgatg 15753517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21882319 - 21882561
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882319 agagacatacttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 21882418  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21882419 atagttgtatgactcacgtgatagtaatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 21882518  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21882519 aatctttgaaaatgaatttgttataatcattttaatgatgatg 21882561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49487988 - 49487746
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49487988 agagacgtatttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatggaaggctcaatttatatgaaagatgtgttgcaat 49487889  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  49487888 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccggtaaaattaattttcgtgagatattgaaggaatgacatcatatgtccattcta 49487789  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  49487788 aatctttgaaaataaatttgttataatcattttaatgatgatg 49487746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 20453620 - 20453766
Alignment:
Q  2 gagacatatttacctgaagttaattcaagaacttttt-----cttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttg 96  Q
    |||||||||| || |||||| ||||||||||||||||     |||| || |||||||||||||  ||||||||  |||||||||||||||||||||| ||    
T  20453620 gagacatattcacttgaagtgaattcaagaactttttttttgcttgattaattaagtttagtaacacatgaaacactcaatttatatgaaagatgtgctg 20453719  T
Q  97 caatatagttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    |||| || ||| |||||||||||||||| ||||||||||||||||||    
T  20453720 caatgtatttgcatgactcacgtgatagcgatgagtatatgaaactc 20453766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17032104 - 17032245
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| | |||| || ||||||||||||||||| | |||||||||||||||||  ||||||||| ||||| |||||||||||||||||| |||     
T  17032104 agagacatattcaactga-gtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaagactcaaattatatgaaagatgtgttacaag 17032202  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
     || ||||||| ||||| |||||||||||  ||||||||||||    
T  17032203 ttatttgtatggctcacttgatagtgatggttatatgaaactc 17032245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 44123010 - 44122892
Alignment:
Q  9 atttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgt 108  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||| | ||  ||||||||||||||| |||||||||||||||||| |||| || || |    
T  44123010 atttacctgaagtgaattcaagaactttttcatacttgattaagttca-tagaacatgaaaggctcaaattatatgaaagatgtgttacaatttatttat 44122912  T
Q  109 atgactcacgtgatagtgat 128  Q
    ||||||||| ||||||||||    
T  44122911 atgactcacttgatagtgat 44122892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 10936113 - 10936213
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| | ||||||| |||||||| |||||||| | |||||||||||| ||||  ||||||||||||||| |||||||||||||||||| ||||||    
T  10936113 agacatattcatctgaagtgaattcaagtactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaagatgtgttacaatat 10936212  T
Q  103 a 103  Q
    |    
T  10936213 a 10936213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 13925466 - 13925570
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||| |||||||||| |||||| | |||||||||||| ||||  ||||||||||||||| |||||| ||||||||||| |||||||     
T  13925466 acatattcacctgaagtgaattcaagaaatttttcatacttgattaagttcagtagcacatgaaaggctcaaattatataaaagatgtgttacaatatat 13925565  T
Q  105 ttgta 109  Q
    |||||    
T  13925566 ttgta 13925570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 2169797 - 2169713
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  2169797 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 2169713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 9725830 - 9725746
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  9725830 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 9725746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 23343389 - 23343473
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  23343389 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 23343473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 13925576 - 13925657
Alignment:
Q  62 acatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    ||||||||||||||| |||||| |||||||||||  |||||| ||||||| | ||| |||||||||||| ||||| ||||||    
T  13925576 acatgaaaggctcaaattatataaaagatgtgttaaaatatatttgtatggcccacctgatagtgatgattatattaaactc 13925657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 13981769 - 13981685
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| | ||  ||||||||||||||| ||||||||||    
T  13981769 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcaatagcacatgaaaggctcaaattatatgaaa 13981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 13989845 - 13989929
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||| ||||| ||||||||||    
T  13989845 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaagactcaaattatatgaaa 13989929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43288653 - 43288411
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288653 agagacatatttacctgaagtgaattcaagaactttttcttgcttgatgaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 43288554  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43288553 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccattcta 43288454  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  43288453 aatctttgaaaatgaatctgttataatcattttaatgatgatg 43288411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25446323 - 25446081
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  25446323 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttaatattacatgaaagactcaatttatatgaaagatgtgttgcaat 25446224  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  25446223 atagttgtatgactcacgtgatagtgatgggtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgaaatcatatgtccattcta 25446124  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  25446123 aatctttgaaaatgaatttgttataatcattttaataatgatg 25446081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19438798 - 19438552
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19438798 agagatatatttacctgaagttaattcaataactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 19438699  T
Q  101 atagttgtatg----actcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccat 196  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  19438698 atagttgtatgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttcgtgagatattgaagaaatgacatcatatgtccat 19438599  T
Q  197 tctaaatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19438598 tctaaatctttgaaaatgaatttgttataatcattttaatgatgatg 19438552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 17320810 - 17320570
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatat 102  Q
    ||||||||| || |||||| |||||  |||||||||||||| ||| |||||||||||  ||||||||| |||| |||| ||||||||||||||| |||||    
T  17320810 agacatattcacttgaagtgaattcctgaactttttcttgcatgactaagtttagtagcacatgaaagactcattttaaatgaaagatgtgttgtaatat 17320711  T
Q  103 agttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattctaaa 202  Q
    | ||||||||||||| ||||||| |||||||||||||| |||  ||   | || ||||||  |||||||||||||||| | |||||||||| ||| ||||    
T  17320710 atttgtatgactcacatgatagtaatgagtatatgaaattctttgaaggagttcattttcatgagatattgaagaaataatatcatatgtcaattttaaa 17320611  T
Q  203 tctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
      |||  |||||||||||| ||||||| ||| |||||||||    
T  17320610 gatttagaaatgaatttgtcataatcaattttatgatgatg 17320570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 16444529 - 16444391
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||| ||||||||| | |||||||     
T  16444529 acatattcacctgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatataaaagatgtgctacaatatat 16444430  T
Q  105 ttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    ||||||| ||||| |||||||||||| ||||| ||||||    
T  16444429 ttgtatggctcacttgatagtgatgattatattaaactc 16444391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 19088464 - 19088586
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| |||||| || ||||||||||||||||| | ||| |||||||| ||||  ||||||||||||||| |||||||||||||||| | |||||||     
T  19088464 acatattcacctga-gtgaattcaagaactttttcatacttaattaagttcagtagcacatgaaaggctcaaattatatgaaagatgtgctacaatatat 19088562  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    || | |||||||| ||||||||||    
T  19088563 ttatgtgactcacttgatagtgat 19088586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 11311046 - 11311169
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||| ||||||||| ||||||| | |||||||||||| ||||  ||||||||  ||||| |||||||||||||||| |  ||||||     
T  11311046 acatattcacctgaagtgaattcaagatctttttcatacttgattaagttcagtagcacatgaaatactcaaattatatgaaagatgtgctataatatat 11311145  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    ||||||| ||| | ||||||||||    
T  11311146 ttgtatggctctcttgatagtgat 11311169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 25229807 - 25229934
Alignment:
Q  16 tgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactc 115  Q
    |||||| ||||||||||||||||| | ||||||||||||  |||  ||||| || |||||| |||||||||| ||||| | ||||||| |||||||  ||    
T  25229807 tgaagtgaattcaagaactttttcatacttgattaagttcggtagcacatggaatgctcaaattatatgaaatatgtgatacaatatatttgtatggttc 25229906  T
Q  116 acgtgatagtgatgagtatatgaaactc 143  Q
    || |||||||||||| ||||| ||||||    
T  25229907 acttgatagtgatgattatatcaaactc 25229934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 21290639 - 21290497
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    ||||||||||| || |||||| ||||||||||||||||| | ||| |||||||| | ||  |||| |||| ||||| ||||||||||||||||   ||||    
T  21290639 agagacatattcacttgaagtgaattcaagaactttttcatacttaattaagttcaatagcacataaaagactcaaattatatgaaagatgtgccacaat 21290540  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    ||| |||||||  | || |||||||||||| ||||| ||||||    
T  21290539 atatttgtatggatgacttgatagtgatgattatattaaactc 21290497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 635295 - 635379
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  635295 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 635379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 1524745 - 1524829
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  1524745 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 1524829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 7911109 - 7911025
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  7911109 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 7911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 14889707 - 14889791
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  14889707 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 14889791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 14897796 - 14897880
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  14897796 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 14897880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 22429359 - 22429443
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  22429359 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 22429443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 22434953 - 22435037
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  22434953 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 22435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 33032678 - 33032806
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttat-atgaaagatgtgttgcaa 99  Q
    ||||||| ||| ||||||||| |||||||||  || |||||||||||||||||||||||  |||||||| ||| ||||||| |  ||| ||||| | |||    
T  33032678 agagacacattcacctgaagtgaattcaagattttattcttgcttgattaagtttagtaacacatgaaatgcttaatttataaaaaaatatgtggtacaa 33032777  T
Q  100 tatagttgtatgactcacgtgatagtgat 128  Q
    | || ||| ||||||||| ||||||||||    
T  33032778 tgtatttgcatgactcacttgatagtgat 33032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 19911268 - 19911403
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||| ||||||||||| ||||| | |||||||||||| | ||  | ||||||||||||| |||||| |||||  || | |||||||     
T  19911268 acatattcacctgaagtgaattcaagaac-ttttcatacttgattaagttcattagcaaatgaaaggctcaaattatataaaaga--tgctacaatatat 19911364  T
Q  105 ttgtatgactcacgtgatagtgatgagtatatgaaactc 143  Q
    ||||||| ||||| ||||| |||||| ||||| ||||||    
T  19911365 ttgtatggctcacttgataatgatgactatattaaactc 19911403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 43776003 - 43776087
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  43776003 agacatattcaccagaagtgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 43776087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 105356 - 105436
Alignment:
Q  62 acatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgatgagtatatgaaact 142  Q
    ||||||||| ||||| |||| ||| | ||||||| |||| || |||| | |||||| |||||||||||| |||||||||||    
T  105356 acatgaaagactcaaattatgtgacatatgtgttacaatgtatttgtgtcactcacttgatagtgatgattatatgaaact 105436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 6412184 - 6411962
Alignment:
Q  16 tgaagttaattcaagaacttttt-cttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgact 114  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6412184 tgaagtgaattcaagaacttttttcttgcttgattaaatttagtatcacaacaaagggtcaatttatatgaaagatgtgttgcaatatagttgtatggct 6412085  T
Q  115 cacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattctaaatctttgaaaatg 214  Q
    ||||||||||| |||| |||||||| ||||| || | | |||||||||  |||||||| ||||||||||||||||||  |||| |||   |||| |||||    
T  6412084 cacgtgatagtaatgaatatatgaagctctctgaaagagttaattttcgtgagatattaaagaaatgacatcatatg--cattttaacgatttggaaatg 6411987  T
Q  215 aatttgttataatcattttaatgat 239  Q
    ||||| ||||||||||||| |||||    
T  6411986 aattttttataatcatttttatgat 6411962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 17271262 - 17271121
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagtt 106  Q
    ||||| || |||||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||||||||||||||| |||| || ||    
T  17271262 atattcacttgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaagatgtgttacaatttattt 17271163  T
Q  107 gtatgactcacgtgatagtgatgagtatatgaaactctccga 148  Q
    |||||  |||| |||||||||||  |||||||||||| ||||    
T  17271162 gtatggttcacttgatagtgatggttatatgaaactccccga 17271121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34267230 - 34266988
Alignment:
Q  1 agagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaat 100  Q
    |||||||| || || |||||| | |||||||| ||||| ||| ||||||||||||||||  |||| ||||   || ||| ||||||||||||||| ||||    
T  34267230 agagacattttcacttgaagtgagttcaagaaatttttattggttgattaagtttagtagcacataaaagatccactttgtatgaaagatgtgttacaat 34267131  T
Q  101 atagttgtatgactcacgtgatagtgatgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattcta 200  Q
     || ||||||||||||| | |   |||||| ||| ||||||||||  | | | |||||||||  |||| ||||||||||||||||||||| ||||||  |    
T  34267130 gtatttgtatgactcacttaaagttgatgattatttgaaactctctaaaagagttaattttcgtgagacattgaagaaatgacatcatatctccatttaa 34267031  T
Q  201 aatctttgaaaatgaatttgttataatcattttaatgatgatg 243  Q
    ||    ||| ||||||||| ||||||||| ||| | |||||||    
T  34267030 aacacctgagaatgaatttattataatcaattttacgatgatg 34266988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 6932031 - 6932162
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttg--tat 110  Q
    |||| |||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||| ||| ||||||| |||| || |||  |||    
T  6932031 acctaaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatattaaatatgtgttacaatttatttgtatat 6932130  T
Q  111 gactcacgtgatagtgatgagtatatgaaact 142  Q
    | ||||| |||||| ||||  |||||||||||    
T  6932131 ggctcacttgatagagatggttatatgaaact 6932162  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 14461806 - 14461695
Alignment:
Q  13 acctgaagttaattcaagaa-ctttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatg 111  Q
    ||||||||| |||||||||| ||||||| | |||||||||||| ||||  ||||||||| ||||| |||||||||| | ||| | ||||||| |||||||    
T  14461806 acctgaagtgaattcaagaatctttttcatacttgattaagttcagtagcacatgaaagactcaaattatatgaaacacgtgctacaatatatttgtatg 14461707  T
Q  112 actcacgtgata 123  Q
     ||||| |||||    
T  14461706 gctcacttgata 14461695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 19442263 - 19442148
Alignment:
Q  7 atatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagtt 106  Q
    ||||| || |||||| ||||||||||||||||      |||||| ||| |||| |||||||||||||||| |||||||||||||||||| | || |  ||    
T  19442263 atattcacttgaagtgaattcaagaacttttt------tgattaggttcagtagtacatgaaaggctcaaattatatgaaagatgtgttaccatttgttt 19442170  T
Q  107 gtatgactcacgtgatagtgat 128  Q
     || ||||||| ||||||||||    
T  19442169 atacgactcacttgatagtgat 19442148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 14851655 - 14851735
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatat 83  Q
    ||||||||| ||| ||||| ||| ||| ||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||    
T  14851655 agacatattcaccagaagtgaatccaataactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatat 14851735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 25394783 - 25394828
Alignment:
Q  83 tgaaagatgtgttgcaatatagttgtatgactcacgtgatagtgat 128  Q
    ||||||||||| | ||||||| ||||||||||||| ||||||||||    
T  25394783 tgaaagatgtgctacaatatatttgtatgactcacttgatagtgat 25394828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 10949 - 11078
Alignment:
Q  2 gagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaata 101  Q
    |||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10949 gagacatattcacctgaaatgaattcaagaactttt-cttgcttgattaagtttagtataacatgaaaggctcaatttatatgaaagatgtgttgcaata 11047  T
Q  102 tagttgtatgactcacgtgatagtgatgagt 132  Q
    |||||||||||||||||||||||||||||||    
T  11048 tagttgtatgactcacgtgatagtgatgagt 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 13047 - 13163
Alignment:
Q  127 atgagtatatgaaactctccgataaaattaattttctagagatattgaagaaatgacatcatatgtccattctaaatctttgaaaatgaatttgttataa 226  Q
    |||||||||||||||||| ||||||| |||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  13047 atgagtatatgaaactcttcgataaagttaattttcgtgagatattgaagaaatgatatcgtatgtccattctaaatctttgaaaatgaatttgttataa 13146  T
Q  227 tcattttaatgatgatg 243  Q
    |||||||||||||||||    
T  13147 tcattttaatgatgatg 13163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 18931 - 19063
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||  ||||||||||||||| |||||| ||| ||||| | ||||||| |||||||     
T  18931 acctgaagtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatgg 19030  T
Q  113 ctcacgtgatagtgatgagtatatgaaactctc 145  Q
    ||||| |||||||||||| ||||| ||||||||    
T  19031 ctcacttgatagtgatgattatatcaaactctc 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 29099 - 29231
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||  ||||||||||||||| |||||| ||| ||||| | ||||||| |||||||     
T  29099 acctgaagtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatgg 29198  T
Q  113 ctcacgtgatagtgatgagtatatgaaactctc 145  Q
    ||||| |||||||||||| ||||| ||||||||    
T  29199 ctcacttgatagtgatgattatatcaaactctc 29231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 39088 - 39220
Alignment:
Q  13 acctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatga 112  Q
    ||||||||| ||||||||||||||||| | |||||||||||| ||||  ||||||||||||||| |||||| ||| ||||| | ||||||| ||||||||    
T  39088 acctgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatga 39187  T
Q  113 ctcacgtgatagtgatgagtatatgaaactctc 145  Q
    ||||| |||||||||||| ||||| ||||||||    
T  39188 ctcacttgatagtgatgattatatcaaactctc 39220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 122171 - 122294
Alignment:
Q  5 acatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatag 104  Q
    ||||||| ||||||||| ||||||||||||||||| | ||||| |||||| |||   |||| |||||||||| |||||||||||||||||| |||| ||     
T  122171 acatattcacctgaagtgaattcaagaactttttcatacttgactaagttcagttgcacataaaaggctcaaattatatgaaagatgtgttacaatttat 122270  T
Q  105 ttgtatgactcacgtgatagtgat 128  Q
    || ||||| |||| ||||||||||    
T  122271 ttatatgattcacttgatagtgat 122294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 122345 - 122405
Alignment:
Q  169 tattgaagaaatgacatcatatgtccattctaaatctttgaaaatgaatttgttataatca 229  Q
    ||||||| | |||||||||| | |||||| |||   |||||||||||||||||||||||||    
T  122345 tattgaaaagatgacatcatttatccattttaagaatttgaaaatgaatttgttataatca 122405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 346819 - 346735
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  346819 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 346735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 13735 - 13651
Alignment:
Q  3 agacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaa 87  Q
    ||||||||| |||  |||| ||| ||||||||||||| | |||||||||||| ||||  ||||||||||||||| ||||||||||    
T  13735 agacatattcaccataagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaa 13651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 10923 - 11030
Alignment:
Q  15 ctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaatttatatgaaagatgtgttgcaatatagttgtatgact 114  Q
    ||||||| ||||||||||||||||      |||||||||| |||| | ||||||| | |||| |||||||||||||||||| |||| |  || |||||||    
T  10923 ctgaagtgaattcaagaacttttt------tgattaagttcagtagtgcatgaaatggtcaaattatatgaaagatgtgttacaatgtgtttatatgact 11016  T
Q  115 cacgtgatagtgat 128  Q
    ||| ||||||||||    
T  11017 cacttgatagtgat 11030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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