View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_high_19 (Length: 255)

Name: NF0648_high_19
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_high_19
NF0648_high_19
[»] scaffold0053 (1 HSPs)
scaffold0053 (33-255)||(27542-27759)
[»] chr4 (4 HSPs)
chr4 (115-247)||(22222938-22223071)
chr4 (32-238)||(21588524-21588731)
chr4 (151-245)||(19555551-19555645)
chr4 (192-238)||(19053027-19053073)
[»] chr7 (1 HSPs)
chr7 (32-255)||(22974933-22975156)
[»] chr2 (8 HSPs)
chr2 (32-228)||(22312023-22312221)
chr2 (32-228)||(19564301-19564499)
chr2 (182-255)||(26653584-26653656)
chr2 (190-247)||(25916831-25916888)
chr2 (167-239)||(27315534-27315607)
chr2 (167-235)||(17417687-17417755)
chr2 (176-255)||(21748740-21748819)
chr2 (183-255)||(16197688-16197760)
[»] chr3 (5 HSPs)
chr3 (32-232)||(36863701-36863901)
chr3 (169-247)||(16199266-16199344)
chr3 (34-117)||(11074204-11074287)
chr3 (163-229)||(46348760-46348825)
chr3 (137-229)||(27486206-27486298)
[»] chr8 (2 HSPs)
chr8 (168-255)||(13645065-13645151)
chr8 (168-255)||(13745490-13745576)
[»] chr5 (3 HSPs)
chr5 (168-247)||(6999156-6999235)
chr5 (205-255)||(30608484-30608534)
chr5 (98-159)||(24494848-24494908)
[»] chr1 (1 HSPs)
chr1 (202-255)||(17496870-17496923)
[»] chr6 (2 HSPs)
chr6 (168-247)||(14271621-14271700)
chr6 (205-238)||(22562989-22563022)


Alignment Details
Target: scaffold0053 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 27542 - 27759
Alignment:
Q  33 gagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactctttaa 132  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27542 gagacttctatttgttcatagcaaatataaacaaacttattcttacatcagatatacaaaagttggtgtaaattgaacaatctttgaacaaactctttaa 27641  T
Q  133 gacttttagggtttttaagatacaaaaattgaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagt 232  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||    
T  27642 gacttttaggatttttaagatacaaaaattgaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagt-----tagcagagt 27736  T
Q  233 attgttgatcttctttaggtctt 255  Q
    |||||||||||||||||||||||    
T  27737 attgttgatcttctttaggtctt 27759  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 22223071 - 22222938
Alignment:
Q  115 tttgaacaaactctttaagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgac 213  Q
    |||||||||||||||||| |||| |||| ||| |||||||||||| ||||| ||||||||| |||||||| |||| ||||||||| || |||||||||||    
T  22223071 tttgaacaaactctttaaaacttctaggatttctaagatacaaaagttgaagcgaaaatcctaagtgtttatgcgctatttgatttggtagagtaatgac 22222972  T
Q  214 acagtaaaaatagcagagtattgttgatcttctt 247  Q
    ||||| |||||| |||||| ||||||||||||||    
T  22222971 acagttaaaataacagagtcttgttgatcttctt 22222938  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 21588731 - 21588524
Alignment:
Q  32 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatata-caaaagttggtgtaaattgaacaatctttgaacaaactcttt 130  Q
    |||||||| | |||||| | | |||||| |||||||||| ||||||||||  || || |||||| |||||||||||||||||  |   |||| ||||| |    
T  21588731 agagacttatgtttgtttacaacaaataaaaacaaacttgttcttacatcggatttaacaaaagatggtgtaaattgaacaaagta--aacagactctat 21588634  T
Q  131 aagacttttagggtttttaagat-acaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagca 228  Q
    |  ||||||||| ||| |||||| |||||  ||||| |||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||||||||    
T  21588633 acaacttttaggatttctaagattacaaatgttgaaacgaaaatccaaagtgtatatgcgctatttgatttggcagagtaatgacacagtcaaaatagca 21588534  T
Q  229 gagtattgtt 238  Q
    |||| |||||    
T  21588533 gagtcttgtt 21588524  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 19555645 - 19555551
Alignment:
Q  151 gatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttc 245  Q
    ||||||||| ||||| |||| |||  |||||||| ||||  |||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  19555645 gatacaaaagttgaaacgaatatctcaagtgtttatgcgcgatttgatttggcagagtaatgacacaataaaaa-agcagagtcttgttgatcttc 19555551  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 19053027 - 19053073
Alignment:
Q  192 tttgattcggcagagtaatgacacagtaaaaatagcagagtattgtt 238  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||    
T  19053027 tttgatttgacagagtaatgacacagtaaaaatagcagagtcttgtt 19053073  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 255
Target Start/End: Original strand, 22974933 - 22975156
Alignment:
Q  32 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactcttta 131  Q
    ||||||||||| ||||| | || |||||||||||||||| || || || || ||| ||||  ||||||||||| | || |||||||||||| ||||||||    
T  22974933 agagacttctacttgtttacagaaaatataaacaaacttgtttttgcaccagataaacaattgttggtgtaaactaaataatctttgaacagactcttta 22975032  T
Q  132 agacttttagggtttttaagatacaaaaattg-aacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcaga 230  Q
    ||| ||||| || ||||||| ||||||| ||| |||||||||   ||||||||||||| ||| ||||| || ||||||||||||| | |||||||||| |    
T  22975033 agaatttta-ggattttaagttacaaaagttgaaacgaaaattttaagtgtttttgcgttatatgatttggtagagtaatgacacggaaaaaatagcaaa 22975131  T
Q  231 gtattgttgatcttctttaggtctt 255  Q
    || ||||| ||||| || |||||||    
T  22975132 gtcttgttaatctttttcaggtctt 22975156  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 22312221 - 22312023
Alignment:
Q  32 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaa-gttggtgtaaattgaacaatctttgaacaaactcttt 130  Q
    |||||||| |||||||| | | | ||||||||||||||| |||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  22312221 agagacttgtatttgtttacaacgaatataaacaaacttgttcttacaccagatatacaaaatgttggtgtaaactgaacaatctttgaacagactcttt 22312122  T
Q  131 aagacttttagggtttttaagatacaaaaattg-aacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagca 228  Q
    |||| || ||||  || |||| | ||||| ||| ||| ||||| | ||||  |||| || ||||||||| |||||||||||| | || |||||||||||    
T  22312121 aagaattataggaattctaagtttcaaaagttgaaacaaaaattctaagttcttttacgctatttgatttggcagagtaatggcgcactaaaaatagca 22312023  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 19564301 - 19564499
Alignment:
Q  32 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagt--tggtgtaaattgaacaatctttgaacaaactctt 129  Q
    |||||||||| |||||| | | |||||||||| |||||  |||||||| || |||||||||  |  ||||||||| |||||||| | |||||||||||||    
T  19564301 agagacttctgtttgtttacaacaaatataaataaactatttcttacaccagatatacaaatttattggtgtaaactgaacaatatatgaacaaactctt 19564400  T
Q  130 taagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagca 228  Q
     |  | |||||||  ||| |||||||| || || || ||||||||| ||||| || |||  ||||||||| ||||||||||||  || || |||||||||    
T  19564401 -atcaattttaggaatttgaagatacacaagtttaaacgaaaatcctaagtgcttatgcactatttgatttggcagagtaatggtaccgttaaaatagca 19564499  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 26653656 - 26653584
Alignment:
Q  182 ttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    ||||||| |||| |||| | ||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||    
T  26653656 ttttgcgctattagatttgacagagtaatgacacagt-aaaatagcagagtcttgttaatcttctttaagtctt 26653584  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 25916888 - 25916831
Alignment:
Q  190 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctt 247  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  |||| ||||||||    
T  25916888 tatttgatttggcagagtaatgacacggtaaaaacagcagagtcatgttcatcttctt 25916831  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 27315534 - 27315607
Alignment:
Q  167 gaaaatccaaagtgtttt-tgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttg 239  Q
    |||||||| ||| ||||| |||| ||||||||| |||| |||||||||||| | ||||||||||||| ||||||    
T  27315534 gaaaatcctaagcgttttatgcgctatttgatttggcaaagtaatgacacaattaaaatagcagagtcttgttg 27315607  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 17417755 - 17417687
Alignment:
Q  167 gaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtatt 235  Q
    |||||||  |||||||| |||| ||||| ||| |  |||||||||||||||| ||||||||||||||||    
T  17417755 gaaaatcttaagtgtttatgcgctatttaatttgatagagtaatgacacagttaaaatagcagagtatt 17417687  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 21748819 - 21748740
Alignment:
Q  176 aagtgtttttgcggtatttgattcgg-cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    ||||||||||||| |||||||||  | |||||||||| ||  |||||| ||| ||||||||||||||||||||||| ||||    
T  21748819 aagtgtttttgcgctatttgattttgacagagtaatggcatggtaaaa-tagaagagtattgttgatcttctttagatctt 21748740  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 16197760 - 16197688
Alignment:
Q  183 tttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttg-atcttctttaggtctt 255  Q
    |||||| ||||||||| | ||||||  |||||||| |||||||||||||| ||||||  |||||||||||||||    
T  16197760 tttgcgctatttgatttgacagagttttgacacag-aaaaatagcagagtcttgttgcttcttctttaggtctt 16197688  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 36863701 - 36863901
Alignment:
Q  32 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactcttta 131  Q
    |||||||||||||| |  | | ||||||||||||||||| |||||||| |  ||| |||   ||||||| |||   |||||||||||||||||||||| |    
T  36863701 agagacttctatttatatacaacaaatataaacaaactttttcttacaccggataaacagttgttggtgaaaaca-aacaatctttgaacaaactcttga 36863799  T
Q  132 agactt-ttagggtttttaagatacaaaaattgaacgaaaa-tccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcag 229  Q
     ||||| ||||| ||| |||||||||||| |||||  |||| ||| |||| | |||||  ||||| ||| |||||||||||||||||||| |||||| ||    
T  36863800 -gacttgttaggatttctaagatacaaaagttgaaacaaaagtcctaagtttgtttgcactatttaatttggcagagtaatgacacagtataaatagaag 36863898  T
Q  230 agt 232  Q
    |||    
T  36863899 agt 36863901  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 16199344 - 16199266
Alignment:
Q  169 aaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctt 247  Q
    |||||| |||||||| | || ||||||||| | ||||||||||| ||| | ||||||||||| ||||||||||||||||    
T  16199344 aaatcctaagtgtttatacgctatttgatttgacagagtaatgaaacaattaaaatagcagattattgttgatcttctt 16199266  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 11074204 - 11074287
Alignment:
Q  34 agacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatcttt 117  Q
    |||||||||||| || | | |||||||||||||| || ||||||||||| ||| ||||   |||||||||| ||||||||||||    
T  11074204 agacttctatttatttacaacaaatataaacaaatttgttcttacatcaaataaacaatttttggtgtaaactgaacaatcttt 11074287  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 46348760 - 46348825
Alignment:
Q  163 gaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcag 229  Q
    |||| ||||||| ||||||||| ||| ||||||||| |||| ||||| |||||||||||||||||||    
T  46348760 gaacaaaaatcctaagtgtttt-gcgctatttgatttggcatagtaacgacacagtaaaaatagcag 46348825  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 27486298 - 27486206
Alignment:
Q  137 tttagggtttttaagatacaaaaattgaacgaaaa-tccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcag 229  Q
    |||||| ||| |||||||||||| |||||  |||| ||| | ||||||| ||| ||||||||| || |||||||||||| ||||||||||||||    
T  27486298 tttaggatttctaagatacaaaagttgaaataaaaatcctatgtgtttt-gcgctatttgatttggtagagtaatgacatagtaaaaatagcag 27486206  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 13645065 - 13645151
Alignment:
Q  168 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    ||||||| ||||||||| | | ||||||||| | ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||    
T  13645065 aaaatcctaagtgtttt-gtgctatttgatttgacagagtaatgacacagtaaaaatagtagagtcttgttaatcttcttcaggtctt 13645151  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 13745490 - 13745576
Alignment:
Q  168 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    ||||||| ||||||||| | | ||||||||| | ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||    
T  13745490 aaaatcctaagtgtttt-gtgctatttgatttgacagagtaatgacacagtaaaaatagtagagtcttgttaatcttcttcaggtctt 13745576  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 6999235 - 6999156
Alignment:
Q  168 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctt 247  Q
    ||||||| |||||||| |||  ||||||||| ||||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  6999235 aaaatcctaagtgtttatgcactatttgatttggcagagtaatgacacatttaaaatagcagagtcttgttaatcttctt 6999156  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 30608534 - 30608484
Alignment:
Q  205 agtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    ||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  30608534 agtaatgacacggtaaaaatagcagagtcttgttgatcttcttcaggtctt 30608484  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 24494908 - 24494848
Alignment:
Q  98 gtgtaaattgaacaatctttgaacaaactctttaagacttttagggtttttaagatacaaaa 159  Q
    ||||||| || ||||| ||||||||||||||||||||| |||||| ||| ||| ||||||||    
T  24494908 gtgtaaactggacaatgtttgaacaaactctttaagac-tttaggatttctaaaatacaaaa 24494848  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 17496923 - 17496870
Alignment:
Q  202 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtctt 255  Q
    |||||||||||||||||||||||| | |||| |||||||||||||| |||||||    
T  17496923 cagagtaatgacacagtaaaaataaccgagtcttgttgatcttcttcaggtctt 17496870  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 14271621 - 14271700
Alignment:
Q  168 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctt 247  Q
    ||||||| ||| |||| |||| ||||||||| |  |||||||||| ||||| |||| |||||||||||||| || |||||    
T  14271621 aaaatcctaagagtttatgcgctatttgatttgatagagtaatgatacagttaaaaaagcagagtattgtttatattctt 14271700  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 22563022 - 22562989
Alignment:
Q  205 agtaatgacacagtaaaaatagcagagtattgtt 238  Q
    |||||||||||||||||||||||||||| |||||    
T  22563022 agtaatgacacagtaaaaatagcagagttttgtt 22562989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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