View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_high_24 (Length: 235)

Name: NF0648_high_24
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_high_24
NF0648_high_24
[»] chr8 (2 HSPs)
chr8 (3-225)||(4194320-4194541)
chr8 (4-32)||(22614346-22614374)
[»] chr5 (1 HSPs)
chr5 (3-225)||(12182875-12183097)
[»] chr1 (3 HSPs)
chr1 (3-225)||(37859470-37859692)
chr1 (48-167)||(52054955-52055074)
chr1 (4-134)||(25624780-25624910)
[»] chr4 (2 HSPs)
chr4 (61-167)||(48008385-48008491)
chr4 (104-167)||(8345098-8345161)
[»] chr2 (2 HSPs)
chr2 (48-170)||(32446815-32446937)
chr2 (95-148)||(18033842-18033895)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-134)||(90916-91046)
[»] chr3 (1 HSPs)
chr3 (4-32)||(42731098-42731126)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 4194541 - 4194320
Alignment:
Q  3 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4194541 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatt-cgtgatcgaaataatccggat 4194443  T
Q  103 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcctttctctccaccatcggttttgtca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4194442 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggttttgtca 4194343  T
Q  203 atagcaagaccgaccactctctg 225  Q
    |||||||||||||||||||||||    
T  4194342 atagcaagaccgaccactctctg 4194320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 22614346 - 22614374
Alignment:
Q  4 catcaacttgatgtaaagaatgcttttct 32  Q
    |||||||||||||||||||||||||||||    
T  22614346 catcaacttgatgtaaagaatgcttttct 22614374  T

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Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 12183097 - 12182875
Alignment:
Q  3 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183097 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 12182998  T
Q  103 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcctttctctccaccatcggttttgtca 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  12182997 catgtctgtcttctaaagaaatcactatatggccttaaacaagccccaagagcatggtaccaacagtttgcatcttttctctccaccatcggttttctca 12182898  T
Q  203 atagcaagaccgaccactctctg 225  Q
    |||||||||||||||||||||||    
T  12182897 atagcaagaccgaccactctctg 12182875  T

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Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 37859470 - 37859692
Alignment:
Q  3 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37859470 tcatcaacttgatgtaaagaatgcttttctccatgggcacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 37859569  T
Q  103 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcctttctctccaccatcggttttgtca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |    
T  37859570 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggctttgtta 37859669  T
Q  203 atagcaagaccgaccactctctg 225  Q
    |||||||||| ||||||||||||    
T  37859670 atagcaagactgaccactctctg 37859692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 52055074 - 52054955
Alignment:
Q  48 tgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagcc 147  Q
    |||||| || || |||||||| |||| ||| ||||||||||   |  |||| ||| |||||||| | ||||| || || |||||||||||||||||||||    
T  52055074 tgaaactgtttatatgcatcaacctcttggctttcgtgatcctcaccatcctgattatgtctgtttactaaataagtcactatatggccttaaacaagcc 52054975  T
Q  148 ccaagagcatggtaccaacg 167  Q
    ||  | ||||||||||||||    
T  52054974 cctcgtgcatggtaccaacg 52054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 25624910 - 25624780
Alignment:
Q  4 catcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatc 103  Q
    |||||||| ||||| || ||||||||| | |||||| | |||   |||||||| || ||||| ||||||||||||||  |||||| | |  |||| || |    
T  25624910 catcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcctggattctgtgatccacaatatcctgagc 25624811  T
Q  104 atgtctgtcttctaaagaaatctctatatgg 134  Q
    |||| ||||| || ||||||||||| |||||    
T  25624810 atgtttgtctcctcaagaaatctctctatgg 25624780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 48008491 - 48008385
Alignment:
Q  61 atgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggt 160  Q
    |||||||| ||||| ||||||||||||    |  |||||||| |||||||||| |||||||| || ||||| |||||||||||||||||  | |||||||    
T  48008491 atgcatcaacctcccggatttcgtgatactcaccatccggattatgtctgtctgctaaagaagtcactataaggccttaaacaagcccctcgtgcatggt 48008392  T
Q  161 accaacg 167  Q
    |||||||    
T  48008391 accaacg 48008385  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 8345098 - 8345161
Alignment:
Q  104 atgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacg 167  Q
    |||||||||| |||||||| || ||||||| |||||||||||||||  | | ||||||||||||    
T  8345098 atgtctgtctactaaagaagtcgctatatgaccttaaacaagcccctcgtgtatggtaccaacg 8345161  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 32446815 - 32446937
Alignment:
Q  48 tgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagcc 147  Q
    |||||| || || |||||||| ||||| || ||||||||||   |  |||| ||| |||||||||| |||||||| |  |||||||||||||||||||||    
T  32446815 tgaaactgtttatatgcatcaacctcccggctttcgtgatcctcaccatcctgattatgtctgtctactaaagaagtaactatatggccttaaacaagcc 32446914  T
Q  148 ccaagagcatggtaccaacggtt 170  Q
    ||  | |||||||||||||||||    
T  32446915 cctcgtgcatggtaccaacggtt 32446937  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 18033842 - 18033895
Alignment:
Q  95 atccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagccc 148  Q
    |||| ||| |||||||||| |||||||| || ||||||||||||||||||||||    
T  18033842 atcctgattatgtctgtctactaaagaagtcactatatggccttaaacaagccc 18033895  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 90916 - 91046
Alignment:
Q  4 catcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatc 103  Q
    |||||||| ||||| || ||||||||| | |||||| | |||   |||||||| || ||||| ||||||||||||||  |||||| | |  |||| || |    
T  90916 catcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcctggattctgtgatccacaatatcctgagc 91015  T
Q  104 atgtctgtcttctaaagaaatctctatatgg 134  Q
    |||| ||||| || ||||||||||| |||||    
T  91016 atgtttgtctcctcaagaaatctctctatgg 91046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 42731098 - 42731126
Alignment:
Q  4 catcaacttgatgtaaagaatgcttttct 32  Q
    |||||||||||||||||||||||||||||    
T  42731098 catcaacttgatgtaaagaatgcttttct 42731126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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