View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_high_3 (Length: 384)
Name: NF0648_high_3
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_high_3 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 270278 - 270000
Alignment:
| Q |
19 |
ggacatcatcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttagaat |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
270278 |
ggacataatcagagaacttgtgggggaaagactggtgcagataggaagcttcctgagggagctaacaaggtatgattgaatcttgtgaactgtttaggat |
270179 |
T |
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| Q |
119 |
gaatgttgtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagataaagggaaaggcaaagcagttgcaact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270178 |
gaatgttgtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttttgtagactgattcagataaagggaaaggcaaagcagttgcaact |
270079 |
T |
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| Q |
219 |
ggtgcatcaaagaaagctaagaagcctacacaaactggaggtagtcaagctggtgggagtaatattggtgggaatcatg |
297 |
Q |
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| T |
270078 |
agtgcatcaaagaaagctaagaagcatacacaaactggaggtagtcaagctggtgggagtaatgctggtgggaatcatg |
270000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 181533 - 181796
Alignment:
| Q |
26 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttagaatgaatgtt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
181533 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggaggtaacaaggtatgattgaatcttgtgaactatttatgatgaatgtt |
181632 |
T |
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| Q |
126 |
gtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagataaagggaaaggcaaagcagttgcaactggtgcat |
225 |
Q |
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| T |
181633 |
gtgtatacatgatgtgaaataagtttgaatgaatgttgtgtatgttttatgtagactggtgcagataaagggaaaggcaaagcagttgcaactggtgcat |
181732 |
T |
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| Q |
226 |
caaagaaagctaagaagcctacacaaactggaggtagtcaagctggtgggagtaatattggtgg |
289 |
Q |
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| T |
181733 |
caaagaaagctaagaagcatacacaaactggaggtagtcaagccggtgggagtcatgttggtgg |
181796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 20893623 - 20893371
Alignment:
| Q |
26 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttagaatgaatgtt |
125 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || || |
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| T |
20893623 |
atcagagaacttgtgggggaaagattggtgcagatagaaagcttcctaagggaggtaacaaggtatgattgaatcttgtgaactgtttatgatgcatctt |
20893524 |
T |
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| Q |
126 |
gtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagataaagggaaaggcaaagcagttgcaactggtgcat |
225 |
Q |
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| T |
20893523 |
gtgtatacataatgtgaaatgagtttgaattaatgttgcgtatgttttctgtagactggtgcagataaagggaaagacaaagaagttgcaactggtgcat |
20893424 |
T |
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| Q |
226 |
caaagaaagctaagaagcctacacaaactggaggtagtcaagctggtgggagt |
278 |
Q |
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| T |
20893423 |
caaagaaagctaagaagcatacacaaactgaaggtagtcaagctggtgggagt |
20893371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 26070746 - 26070564
Alignment:
| Q |
26 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttagaatgaatgtt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26070746 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttaggatgaatgtt |
26070647 |
T |
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| Q |
126 |
gtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagataaagggaaaggcaaagc |
208 |
Q |
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| T |
26070646 |
gtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagataaagggaaaggcaaagc |
26070564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 26360061 - 26360319
Alignment:
| Q |
26 |
atcagagaacttgtgggggaaagactggtgcagataggaagcttcctaagggagctaacaaggtatgattgaatcttgtgaactgtttagaatgaatgtt |
125 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| || || |
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| T |
26360061 |
atcagagaacttgtgggggaaagactggtgtagataggaatcttcctaagggaggtaacaaggtatgattgaatcttgtgaactgtttatgatgcatctt |
26360160 |
T |
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| Q |
126 |
gtgtatacatgatatgaaatgagtttgaatgaatgttgtgtatgttttctgtagactgattcagat------aaagggaaaggcaaagcagttgcaactg |
219 |
Q |
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||||||||||||| |||||| | ||||||| | ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |
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| T |
26360161 |
gtgtatacatgatgtgaaataaatttgaattagtgttgtgtatgttttctgtagactggtgcagataaagggaaagggaaaggcaaagcagttgcaactg |
26360260 |
T |
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| Q |
220 |
gtgcatcaaagaaagctaagaagcctacacaaactggaggtagtcaagctggtgggagt |
278 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26360261 |
gtgcatcaaagaaagctaagaagcacacacaaactggaggtagtcaagctggtgggagt |
26360319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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