View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_1 (Length: 600)
Name: NF0648_low_1
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_1 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0055 (1 HSPs) |
| |
|
| [»] scaffold0052 (1 HSPs) |
| |
|
| [»] scaffold0689 (1 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 39 - 600
Target Start/End: Complemental strand, 18353592 - 18353031
Alignment:
| Q |
39 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353592 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
18353493 |
T |
|
| Q |
139 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtaga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353492 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatatagatagatataggatctatggaaaaattacttagaagtaga |
18353393 |
T |
|
| Q |
239 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353392 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
18353293 |
T |
|
| Q |
339 |
atctaattatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccag |
438 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18353292 |
gtctaattatattagtgtctataatggattttttttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccag |
18353193 |
T |
|
| Q |
439 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353192 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
18353093 |
T |
|
| Q |
539 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353092 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
18353031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 40977501 - 40977574
Alignment:
| Q |
279 |
catgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtatctaattatatta |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
40977501 |
catgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtttatgaagagtctatctaattatatta |
40977574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 22101687 - 22101632
Alignment:
| Q |
544 |
ccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatcca |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22101687 |
ccttcgtattttaatacacgtatttaatttattcggagctattagacagggatcca |
22101632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 39 - 600
Target Start/End: Complemental strand, 1601 - 1040
Alignment:
| Q |
39 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1601 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaatataaagaagtatcgttaatttcatcatgcttgttccaag |
1502 |
T |
|
| Q |
139 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtaga |
238 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1501 |
ttccaagcaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatatagatagatataggatctatggaaaaattacttagaagtaga |
1402 |
T |
|
| Q |
239 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1401 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
1302 |
T |
|
| Q |
339 |
atctaattatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1301 |
atctaattatattagtgtctataatggattttttttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccag |
1202 |
T |
|
| Q |
439 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1201 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
1102 |
T |
|
| Q |
539 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1101 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
1040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 39 - 600
Target Start/End: Original strand, 82934 - 83495
Alignment:
| Q |
39 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
82934 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaatataaagaagtatcgttaatttcatcatgcttgttccaag |
83033 |
T |
|
| Q |
139 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtaga |
238 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83034 |
ttccaagcaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatatagatagatataggatctatggaaaaattacttagaagtaga |
83133 |
T |
|
| Q |
239 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83134 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
83233 |
T |
|
| Q |
339 |
atctaattatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
83234 |
atctaattatattagtgtctataatggattttttttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccag |
83333 |
T |
|
| Q |
439 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83334 |
agttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaata |
83433 |
T |
|
| Q |
539 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83434 |
agaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
83495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 39 - 425
Target Start/End: Original strand, 13232033 - 13232419
Alignment:
| Q |
39 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13232033 |
cattaggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaag |
13232132 |
T |
|
| Q |
139 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtaga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13232133 |
ttccaagtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatatagatagatataggatctatggaaaaattacttagaagtaga |
13232232 |
T |
|
| Q |
239 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13232233 |
ttttgtgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgt |
13232332 |
T |
|
| Q |
339 |
atctaattatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgta |
425 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13232333 |
gtctaattatattagtgtctataatggattttttttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgta |
13232419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 49214867 - 49214837
Alignment:
| Q |
39 |
cattaggtccggttagagaccaaaggttttg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49214867 |
cattaggtccggttagagaccaaaggttttg |
49214837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 44 - 600
Target Start/End: Complemental strand, 3974 - 3418
Alignment:
| Q |
44 |
ggtccggttagagaccaaaggttttgagcgacggatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaagttcca |
143 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
3974 |
ggtccgggtagagaccaaaggtcttgagcgaccgatccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgctcgttccaagctcga |
3875 |
T |
|
| Q |
144 |
agtaccatttgtacaaatcagaatccaccccgttacatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtagattttg |
243 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
3874 |
agtaccatttgtacaaataagaatccccttcgttacatgatttcttcttcatatagatagatataggatctaaggggcaattacttagaagtacattttg |
3775 |
T |
|
| Q |
244 |
tgaaacagcccttcctatctgatagaaaagtataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtatcta |
343 |
Q |
| |
|
| ||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3774 |
tacaacagcccttcctatctgatagaaaaggatcccatgatcctgaaccgatcttacctgggatcgcaaatcccaagtttgtctatgaagagcagatcta |
3675 |
T |
|
| Q |
344 |
attatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccagagtta |
443 |
Q |
| |
|
||| |||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||| |||| |
|
|
| T |
3674 |
attgtattagtgtctataattgatttcttctgtgtaatactaatcgatagggcctcattggtaagtgctacaagatctcgtgcattggaacccacggtta |
3575 |
T |
|
| Q |
444 |
tggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaag |
543 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||| |||| ||| | |||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
3574 |
tggacccgaatccattagtatggaacattttcttttccaagtgaaatcccctagtatatgaaagagtgaaaaagtgctttcgttgttgtggaataagaag |
3475 |
T |
|
| Q |
544 |
ccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3474 |
ccttcgtatcttaatacatgtatttaatttattcggggctattagagtgggatccac |
3418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 321 - 600
Target Start/End: Original strand, 7708247 - 7708527
Alignment:
| Q |
321 |
tttgtctatgaagagcgtatctaattatattagtgtctataatggannnnnnnngtataatactaatcgatagcgcctcattggtaagtgctacaagatc |
420 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7708247 |
tttgtctatgaagagcggatctaattacatcagtgtctataatggattttttttgtataatactaatcgctagcgcctcgttggtaagtgctacaagatc |
7708346 |
T |
|
| Q |
421 |
tcgtacattagagcccagagttatggacccgcatccattagtatcgaatattttctttt-ccaagtgaaaaccccgcgtacgagcaagactgaaaaagtg |
519 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7708347 |
tcgtacattagaacccagagttgtggacctacatccattagtatcgaacattttctttttccaagtgaaaacctcgcgtacgagcaagactgaaaaagtg |
7708446 |
T |
|
| Q |
520 |
ctttctttgttgtggaataagaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
7708447 |
ctttctttgttgtggaataagaaaccttcatatttaaatacacgtgtttaatttatttggagctcttagagcgggatccac |
7708527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 399 - 600
Target Start/End: Complemental strand, 2916897 - 2916696
Alignment:
| Q |
399 |
cattggtaagtgctacaagatctcgtacattagagcccagagttatggacccgcatccattagtatcgaatattttcttttccaagtgaaaaccccgcgt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2916897 |
cattggtaagtgctacaagatctcgtacattagaacccagagttatagacccgcatccattagtatcgaatattttcttttccaagtgaaaacaccgcgt |
2916798 |
T |
|
| Q |
499 |
acgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatcc |
598 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2916797 |
acgagcgagactgaaaaagtgctttctttgttgtggaataagaagccttcatattttaatacacgtatttaatttattcgaagctattagagcgggatcc |
2916698 |
T |
|
| Q |
599 |
ac |
600 |
Q |
| |
|
|| |
|
|
| T |
2916697 |
ac |
2916696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 39337653 - 39337794
Alignment:
| Q |
178 |
acatgatttcttcttcatttagatagatataggatctatggaaaaattacttagaagtagattttgtgaaacagcccttcctatctgatagaaaagtata |
277 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39337653 |
acatgatttcttctttatatagatagatataggatctatggaaaaattacttagaaatagattttgtgaaacagtccttcctatctgatagaaaagtata |
39337752 |
T |
|
| Q |
278 |
ccatgatcctcaaccgatcttatctgagatctaaaatcccaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39337753 |
ccatgatcctcaaccgatcttatctgagatctaaaatcccaa |
39337794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 14989669 - 14989497
Alignment:
| Q |
375 |
gtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccagagttatggacccgcatccattagtatcgaatatttt |
474 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | || ||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
14989669 |
gtataatactaattgatagagcctcattggtaagtgctataagatctcgtacattagaactgagggttatggacccaaatccattagtatggaacatttt |
14989570 |
T |
|
| Q |
475 |
cttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
548 |
Q |
| |
|
|||||||||| |||| |||| || ||||| ||||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
14989569 |
attttccaagt-aaaaacccgagtgcgagccagactgaaaaattactttctttattgcggaataagaagccttc |
14989497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 48616289 - 48616348
Alignment:
| Q |
541 |
aagccttcgtattttaatacacgtatttaatttattcggagctattagagcgggatccac |
600 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48616289 |
aagccttcgtattttaatacacatatttaatttattcggagctattagagcgggatccac |
48616348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 551
Target Start/End: Original strand, 196586 - 197059
Alignment:
| Q |
79 |
tccggcagaacaactcaaaagataaagaagtatcgttaatttcttcatgcttgttccaagttccaagtaccatttgtacaaatcagaatccaccccgtta |
178 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| |||||||| |||||||||| ||||||||||| ||||||| |||| |||| | || || | | | | |
|
|
| T |
196586 |
tccgccagaaaaactcaaaagagaaagaagtctcgttaatctcttcatgctcgttccaagttcgaagtaccttttggccaaagaaaaacccgcttcctga |
196685 |
T |
|
| Q |
179 |
catgatttcttcttcatttagatagatataggatctatggaaaaattacttag-aagtagattttgtgaaacagcccttcctatctgatagaaaagtata |
277 |
Q |
| |
|
|| |||| | |||| || | ||| | |||| ||||||| ||||||||| |||| ||||||| || ||||| |||||||||||||||||| | |
|
|
| T |
196686 |
cacgattgcctctttatctttatatagatagattctatggggttattacttagtaagtctattttgtacaagagcccctcctatctgatagaaaagggtc |
196785 |
T |
|
| Q |
278 |
ccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtatctaattatattagtgtctataatggannnnnnnngta |
377 |
Q |
| |
|
||||||||| | ||||||||| || | || ||| |||||||||||||||||||||| |||||||| |||| | |||| |||||| || |
|
|
| T |
196786 |
ccatgatcccgagccgatcttaccttggctcgcaaaccccaagtttgtctatgaagagctaatctaattgtatttttttctagaatggatttcttatgtg |
196885 |
T |
|
| Q |
378 |
taatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagagcccagagttatggacccgcatccattagtatcgaatattttctt |
477 |
Q |
| |
|
||||||||| ||||| ||||| ||| ||||||||||||||||| || || | || | | |||||||||||| |||| ||||||| ||| ||| |||| |
|
|
| T |
196886 |
gaatactaatggatagggcctcgttgctaagtgctacaagatctagtgcactggaactcgtggttatggacccgaatcctttagtatggaacattgtctt |
196985 |
T |
|
| Q |
478 |
ttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttcgta |
551 |
Q |
| |
|
|||||||| |||||||| ||| | |||| |||||| |||||||| || ||||||||||||||||| ||||| |
|
|
| T |
196986 |
ttccaagtaaaaacccctagtatatgaaagaatgaaaaggtgctttcgttcttgtggaataagaagccctcgta |
197059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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